C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033010 Kdm8-001 ENSMUSG00000030752 10090 + 7:125444676-125462265 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033010
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033010 1.738±0.45 2.244±0.37 2.586±0.16 1.582±0.61 0.776±0.00 1.167±0.33 1.564±0.26 1.230±0.15 2.619±1.92 1.668±0.44 3.586±0.54 1.774±0.77 2.548±1.01 1.013±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V9 CIL_0003V9_0003 CGP 7:125444676-125491596

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 ISS G2/M transition of mitotic cell cycle
GO:0003674 ND molecular_function
GO:0003682 ISS chromatin binding
GO:0005575 ND cellular_component
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051864 ISS histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0070544 ISS histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286096 KDM8-001 protein_coding Homo_sapiens 0 900
ENST00000441782 KDM8-002 protein_coding Homo_sapiens 0 900
ENST00000563571 KDM8-009 retained_intron Homo_sapiens 0 292
ENST00000567366 KDM8-008 processed_transcript Homo_sapiens 0 351
ENST00000567735 KDM8-011 protein_coding Homo_sapiens 3.00018e-42 176
ENST00000567785 KDM8-005 processed_transcript Homo_sapiens 0 278
ENST00000568792 KDM8-007 retained_intron Homo_sapiens 9.80909e-45 183

Loading