C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033012 Copb1-201 ENSMUSG00000030754 10090 - 7:114215559-114254680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033012
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033012 29.315±8.47 27.742±2.98 17.953±0.80 13.138±4.77 21.191±8.66 33.171±3.75 9.107±1.65 19.821±6.15 18.756±4.23 30.700±5.24 5.936±0.46 25.172±8.58 46.112±4.37 12.801±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PN CIL_0003PN_0002 CGP 7:114046785-114254680
CIL_0003PO CIL_0003PO_0002 CGP 7:114215559-114276118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005794 IDA Golgi apparatus
GO:0005798 IEA Golgi-associated vesicle
GO:0005886 IEA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0016020 IEA membrane
GO:0030137 IDA COPI-coated vesicle
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249923 COPB1-001 protein_coding Homo_sapiens 0 4281
ENST00000439561 COPB1-002 protein_coding Homo_sapiens 0 4237
ENST00000525214 COPB1-009 processed_transcript Homo_sapiens 0 475
ENST00000526527 COPB1-008 processed_transcript Homo_sapiens 0 326
ENST00000529210 COPB1-005 processed_transcript Homo_sapiens 2e-38 163
ENST00000529866 COPB1-012 protein_coding Homo_sapiens 0 532
ENST00000533096 COPB1-013 processed_transcript Homo_sapiens 0 228
ENST00000533533 COPB1-006 processed_transcript Homo_sapiens 6.99949e-42 174
ENST00000534234 COPB1-003 protein_coding Homo_sapiens 0 2013
ENST00000534771 COPB1-004 protein_coding Homo_sapiens 0 508
ENST00000555531 PSMA1-001 nonsense_mediated_decay Homo_sapiens 0 440

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