C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome subunit alpha type-1 isoform 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555531 PSMA1-001 ENSG00000256206 9606 - 11:14493783-14520344 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PN CIL_0003PN_0001 CGP 11:14277926-14500027
CIL_0003PO CIL_0003PO_0001 CGP 11:14443440-14520344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005839 IEA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135570 Psma1-004 processed_transcript Mus_musculus 0 566
ENSMUST00000033008 Psma1-001 protein_coding Mus_musculus 0 566
ENSMUST00000154909 Psma1-002 retained_intron Mus_musculus 0 496
ENSMUST00000033012 Copb1-201 protein_coding Mus_musculus 0 440
ENSMUST00000123801 Psma1-003 retained_intron Mus_musculus 0 285

Loading