C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dickkopf homolog 3 (Xenopus laevis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033036 Dkk3-201 ENSMUSG00000030772 10090 - 7:112116019-112159057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033036 9.528±8.04 11.631±0.57 28.788±6.06 7.016±4.70 3.748±1.64 10.136±1.39 17.659±4.66 6.555±0.84 0.581±0.40 15.810±2.02 1.166±0.26 23.941±4.57 1.762±1.08 0.223±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0001HU CIL_0001HU_0003 CGP 7:112023506-112159057
CIL_0007SQ CIL_0007SQ_0002 VISTA 7:112051476-112653289
CIL_0004J2 CIL_0004J2_0002 CGP 7:112116019-112355194

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 ISS extracellular region
GO:0005615 ISA extracellular space
GO:0016055 IEA Wnt signaling pathway
GO:0030325 IEA adrenal gland development
GO:0032348 IEA negative regulation of aldosterone biosynthetic process
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway
GO:2000065 IEA negative regulation of cortisol biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326932 DKK3-001 protein_coding Homo_sapiens 0 1059
ENST00000396505 DKK3-004 protein_coding Homo_sapiens 0 1059
ENST00000525493 DKK3-002 protein_coding Homo_sapiens 0 880
ENST00000525927 DKK3-012 processed_transcript Homo_sapiens 0 420
ENST00000528188 DKK3-015 processed_transcript Homo_sapiens 0 564
ENST00000532372 DKK3-014 retained_intron Homo_sapiens 0 446
ENST00000532873 DKK3-009 processed_transcript Homo_sapiens 0 641
ENST00000533813 DKK3-010 protein_coding Homo_sapiens 0 725
ENST00000534511 DKK3-016 protein_coding Homo_sapiens 0 246

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