C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004J2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000050165-ENSG00000133816 CGP 9606 11:11963106-12263789
GeneTranscriptPositionBiotype
ENSG00000050165 (DKK3)
dickkopf WNT signaling pathway inhibitor 3
ENST00000326932 (DKK3-001) 11963106-12009370 protein_coding
ENST00000396505 (DKK3-004) 11963106-12009082 protein_coding
ENST00000525493 (DKK3-002) 11964391-12009769 protein_coding
ENST00000525927 (DKK3-012) 11965873-11979916 processed_transcript
ENST00000526218 (DKK3-013) 11978840-12009725 processed_transcript
ENST00000527132 (DKK3-003) 11963106-12008630 processed_transcript
ENST00000528188 (DKK3-015) 11964615-11994719 processed_transcript
ENST00000529338 (DKK3-017) 11968443-12009137 protein_coding
ENST00000530694 (DKK3-005) 12001675-12009737 processed_transcript
ENST00000531309 (DKK3-008) 11998200-12002426 retained_intron
ENST00000532372 (DKK3-014) 11965850-11968746 retained_intron
ENST00000532873 (DKK3-009) 11965880-12008897 processed_transcript
ENST00000533813 (DKK3-010) 11965935-12009211 protein_coding
ENST00000533900 (DKK3-006) 12001904-12009212 processed_transcript
ENST00000534479 (DKK3-007) 12001749-12009330 retained_intron
ENST00000534511 (DKK3-016) 11966993-12008624 protein_coding
ENSG00000133816 (MICAL2)
microtubule associated monooxygenase, calponin and LIM domain containing 2
ENST00000256194 (MICAL2-001) 12110591-12263785 protein_coding
ENST00000342902 (MICAL2-201) 12138390-12263789 protein_coding
ENST00000379612 (MICAL2-202) 12162079-12263789 protein_coding
ENST00000524685 (MICAL2-023) 12161443-12204347 protein_coding
ENST00000524730 (MICAL2-020) 12213255-12216393 retained_intron
ENST00000525075 (MICAL2-013) 12239460-12257233 retained_intron
ENST00000525119 (MICAL2-024) 12161446-12204387 protein_coding
ENST00000525216 (MICAL2-015) 12242182-12242984 processed_transcript
ENST00000525444 (MICAL2-017) 12259689-12263781 retained_intron
ENST00000525618 (MICAL2-004) 12252532-12263787 retained_intron
ENST00000525979 (MICAL2-027) 12243200-12256968 processed_transcript
ENST00000526065 (MICAL2-026) 12094017-12162420 protein_coding
ENST00000526475 (MICAL2-014) 12226207-12244034 processed_transcript
ENST00000526604 (MICAL2-012) 12256842-12260748 processed_transcript
ENST00000526672 (MICAL2-016) 12249941-12256909 processed_transcript
ENST00000527195 (MICAL2-019) 12195945-12208146 processed_transcript
ENST00000527546 (MICAL2-007) 12138388-12262919 protein_coding
ENST00000528931 (MICAL2-006) 12162156-12260172 retained_intron
ENST00000529562 (MICAL2-021) 12225585-12227098 processed_transcript
ENST00000530021 (MICAL2-005) 12253234-12263782 retained_intron
ENST00000530691 (MICAL2-003) 12207725-12263785 retained_intron
ENST00000530823 (MICAL2-011) 12116696-12162166 protein_coding
ENST00000531732 (MICAL2-002) 12110605-12208369 retained_intron
ENST00000532166 (MICAL2-018) 12195945-12197811 processed_transcript
ENST00000532179 (MICAL2-008) 12094008-12204280 protein_coding
ENST00000532420 (MICAL2-010) 12121475-12162419 protein_coding
ENST00000532945 (MICAL2-009) 12094128-12096221 processed_transcript
ENST00000533219 (MICAL2-022) 12224438-12227193 retained_intron
ENST00000533389 (MICAL2-025) 12161868-12204290 protein_coding
ENST00000534563 (MICAL2-028) 12242321-12259942 processed_transcript
ENST00000537344 (MICAL2-203) 12138390-12263789 protein_coding
ENSG00000254486 (RP13-631K18.2)
ENST00000531559 (RP13-631K18.2-001) 12030875-12061785 lincRNA
ENSG00000254680 (RP11-265D17.2)
ENST00000527288 (RP11-265D17.2-001) 12261426-12263173 antisense
ENSG00000254991 (RP13-631K18.3)
ENST00000476130 (RP13-631K18.3-001) 12066929-12073014 lincRNA
ENSG00000255400 (RP13-631K18.5)
ENST00000527997 (RP13-631K18.5-001) 12086891-12089441 lincRNA
ENSG00000275373 (MIR6124)
microRNA 6124
ENST00000617177 (MIR6124-201) 12163683-12163767 miRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0004J2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030772-ENSMUSG00000038244 CGP 10090 7:112116019-112355194
GeneTranscriptPositionBiotype
ENSMUSG00000030772 (Dkk3)
dickkopf homolog 3 (Xenopus laevis)
ENSMUST00000033036 (Dkk3-201) 112116019-112159057 protein_coding
ENSMUSG00000038244 (Mical2)
microtubule associated monooxygenase, calponin and LIM domain containing 2
ENSMUST00000037991 (Mical2-004) 112271299-112353975 protein_coding
ENSMUST00000050149 (Mical2-001) 112225856-112355194 protein_coding
ENSMUST00000106647 (Mical2-002) 112225890-112315415 protein_coding
ENSMUST00000106648 (Mical2-005) 112225890-112348368 protein_coding
ENSMUST00000144509 (Mical2-006) 112346729-112355194 protein_coding
ENSMUST00000150428 (Mical2-003) 112316029-112347491 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J2_0001ENSG00000050165ENST00000326932ENST00000396505ENST00000525493ENST00000527132ENSG00000133816ENST00000256194ENST00000342902ENST00000379612ENST00000526475ENST00000527546ENST00000530021ENST00000530691ENST00000531732ENST00000534563ENST00000537344ENSG00000254486ENST00000531559ENSG00000254680ENST00000527288ENSG00000254991ENST00000476130ENSG00000255400ENST00000527997ENSG00000275373ENST00000617177CIL_0004J2_0002ENSMUSG00000030772ENSMUST00000033036ENSMUSG00000038244ENSMUST00000037991ENSMUST00000050149ENSMUST00000106647ENSMUST00000144509
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050165 ENST00000326932 3.610±0.00 5.863±0.00 N/A 139.310±116.71 6.327±5.06 17.170±16.31 32.072±30.92 8.918±8.66 1.432±0.00 12.096±8.58 3.415±0.00 22.292±16.28 23.231±2.93 22.168±12.81
ENST00000396505 N/A N/A N/A 6.394±0.00 1.044±0.00 N/A 3.153±0.00 N/A N/A 3.872±0.00 N/A N/A N/A N/A
ENST00000525493 N/A N/A 2.079±0.00 13.510±0.00 N/A N/A 3.132±0.00 N/A N/A N/A 1.643±0.00 N/A N/A N/A
ENST00000525927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527132 3.258±0.00 11.773±0.00 N/A 63.041±38.73 2.672±0.00 6.633±5.33 3.059±0.00 3.599±3.10 5.234±3.67 N/A 0.862±0.00 22.580±0.00 25.344±0.00 16.409±0.93
ENST00000528188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133816 ENST00000256194 N/A N/A N/A 27.031±0.00 N/A N/A 6.568±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000342902 N/A N/A N/A 9.621±3.18 N/A N/A 5.018±0.00 N/A N/A N/A 17.276±0.00 N/A N/A N/A
ENST00000379612 1.347±0.00 5.047±0.00 N/A N/A 1.433±0.00 4.016±0.38 N/A 3.098±0.00 4.282±0.00 9.436±0.00 N/A 2.605±1.63 2.450±0.07 8.732±2.43
ENST00000524685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.895±0.00 16.766±0.00 65.221±0.00
ENST00000526604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527546 N/A N/A 1.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.086±0.00 N/A N/A
ENST00000528931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530021 N/A N/A 0.422±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530691 N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A 1.513±0.47 2.742±0.00 N/A 1.813±0.51 N/A 4.445±0.00
ENST00000530823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A N/A
ENST00000532166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.071±0.00 N/A N/A N/A
ENST00000537344 N/A N/A N/A N/A N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000254486 ENST00000531559 0.071±0.00 0.307±0.00 N/A 0.152±0.00 0.054±0.00 0.032±0.00 0.078±0.00 0.039±0.00 0.048±0.00 0.054±0.00 0.094±0.00 0.026±0.01 0.013±0.00 0.084±0.03
ENSG00000254680 ENST00000527288 N/A 17.473±0.00 N/A N/A N/A 24.461±0.00 N/A 8.385±0.00 13.493±0.00 22.654±0.00 N/A N/A N/A 34.471±0.00
ENSG00000254991 ENST00000476130 0.204±0.00 0.645±0.00 N/A 0.374±0.00 0.206±0.00 0.190±0.00 0.102±0.00 0.078±0.00 0.095±0.00 0.216±0.03 0.191±0.00 0.055±0.00 0.262±0.04 0.138±0.08
ENSG00000255400 ENST00000527997 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A 0.113±0.00 N/A
ENSG00000275373 ENST00000617177 N/A N/A N/A 0.742±0.00 N/A 0.649±0.00 N/A N/A N/A N/A N/A 0.735±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030772 ENSMUST00000033036 9.528±8.04 11.631±0.57 28.788±6.06 7.016±4.70 3.748±1.64 10.136±1.39 17.659±4.66 6.555±0.84 0.581±0.40 15.810±2.02 1.166±0.26 23.941±4.57 1.762±1.08 0.223±0.14
ENSMUSG00000038244 ENSMUST00000037991 N/A N/A N/A 94.567±0.00 N/A N/A 3.817±0.00 N/A N/A N/A 17.929±0.00 N/A N/A N/A
ENSMUST00000050149 10.125±4.59 2.592±0.52 9.503±0.13 0.353±0.12 6.275±0.55 17.468±1.17 5.344±1.43 2.751±0.29 2.419±1.21 29.242±1.54 2.000±0.53 12.790±3.41 11.163±5.25 3.098±1.24
ENSMUST00000106647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.108±0.00 N/A N/A N/A
ENSMUST00000106648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.700±0.00
ENSMUST00000150428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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