C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000088890-ENSDARG00000077630 CGP 7955 Zv9_scaffold3485:190590-284328
GeneTranscriptPositionBiotype
ENSDARG00000077630 (dkk3a)
dickkopf homolog 3a (Xenopus laevis) 		ENSDART00000111046 (dkk3a-201) 266552-284328 protein_coding
ENSDARG00000088890 (usp47)
ubiquitin specific peptidase 47 		ENSDART00000129206 (usp47-201) 190590-227559 protein_coding
CIL_0001HU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170242-ENSG00000050165 CGP 9606 11:11841423-12009769
GeneTranscriptPositionBiotype
ENSG00000050165 (DKK3)
dickkopf WNT signaling pathway inhibitor 3 		ENST00000326932 (DKK3-001) 11963106-12009370 protein_coding
ENST00000396505 (DKK3-004) 11963106-12009082 protein_coding
ENST00000525493 (DKK3-002) 11964391-12009769 protein_coding
ENST00000525927 (DKK3-012) 11965873-11979916 processed_transcript
ENST00000526218 (DKK3-013) 11978840-12009725 processed_transcript
ENST00000527132 (DKK3-003) 11963106-12008630 processed_transcript
ENST00000528188 (DKK3-015) 11964615-11994719 processed_transcript
ENST00000529338 (DKK3-017) 11968443-12009137 protein_coding
ENST00000530694 (DKK3-005) 12001675-12009737 processed_transcript
ENST00000531309 (DKK3-008) 11998200-12002426 retained_intron
ENST00000532372 (DKK3-014) 11965850-11968746 retained_intron
ENST00000532873 (DKK3-009) 11965880-12008897 processed_transcript
ENST00000533813 (DKK3-010) 11965935-12009211 protein_coding
ENST00000533900 (DKK3-006) 12001904-12009212 processed_transcript
ENST00000534479 (DKK3-007) 12001749-12009330 retained_intron
ENST00000534511 (DKK3-016) 11966993-12008624 protein_coding
ENSG00000170242 (USP47)
ubiquitin specific peptidase 47 		ENST00000305481 (USP47-005) 11950443-11959154 processed_transcript
ENST00000339865 (USP47-001) 11841423-11959323 protein_coding
ENST00000399455 (USP47-003) 11842066-11959323 protein_coding
ENST00000525078 (USP47-006) 11938330-11943149 retained_intron
ENST00000525257 (USP47-013) 11841940-11884499 processed_transcript
ENST00000525367 (USP47-008) 11880186-11884705 retained_intron
ENST00000527733 (USP47-002) 11841975-11956421 protein_coding
ENST00000529813 (USP47-004) 11950873-11956945 retained_intron
ENST00000530041 (USP47-009) 11943427-11949975 processed_transcript
ENST00000530369 (USP47-010) 11948024-11952777 retained_intron
ENST00000531513 (USP47-011) 11942950-11949074 retained_intron
ENSG00000255492 (CTD-2381F24.1)
 ENST00000530297 (CTD-2381F24.1-001) 11856490-11856859 processed_pseudogene
CIL_0001HU_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059263-ENSMUSG00000030772 CGP 10090 7:112023506-112159057
GeneTranscriptPositionBiotype
ENSMUSG00000030772 (Dkk3)
dickkopf homolog 3 (Xenopus laevis) 		ENSMUST00000033036 (Dkk3-201) 112116019-112159057 protein_coding
ENSMUSG00000059263 (Usp47)
ubiquitin specific peptidase 47 		ENSMUST00000106653 (Usp47-201) 112023506-112111386 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HU_0001ENSDARG00000077630ENSDART00000111046ENSDARG00000088890ENSDART00000129206CIL_0001HU_0002ENSG00000050165ENST00000326932ENST00000396505ENST00000525493ENST00000525927ENST00000526218ENST00000527132ENST00000528188ENST00000529338ENST00000530694ENST00000531309ENST00000532372ENST00000532873ENST00000533813ENST00000533900ENST00000534479ENST00000534511ENSG00000170242ENST00000305481ENST00000339865ENST00000399455ENST00000525078ENST00000525257ENST00000525367ENST00000527733ENST00000529813ENST00000530041ENST00000530369ENST00000531513ENSG00000255492ENST00000530297CIL_0001HU_0003ENSMUSG00000030772ENSMUST00000033036ENSMUSG00000059263ENSMUST00000106653
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HU_0001ENSDARG00000077630ENSDART00000111046ENSDARG00000088890ENSDART00000129206CIL_0001HU_0002ENSG00000050165ENST00000326932ENST00000396505ENST00000525493ENST00000527132ENSG00000170242ENST00000305481ENST00000339865ENST00000399455ENST00000525078ENST00000527733ENSG00000255492ENST00000530297CIL_0001HU_0003ENSMUSG00000030772ENSMUST00000033036ENSMUSG00000059263ENSMUST00000106653
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000077630 ENSDART00000111046 N/A N/A N/A 32.281±0.59 N/A N/A 0.228±0.10 0.535±0.00 N/A N/A 2.136±0.00 N/A N/A N/A
ENSDARG00000088890 ENSDART00000129206 N/A N/A N/A 3.654±4.86 N/A N/A 1.697±1.45 0.665±0.54 1.053±0.00 N/A 3.892±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050165 ENST00000326932 3.610±0.00 5.863±0.00 N/A 139.310±116.71 6.327±5.06 17.170±16.31 32.072±30.92 8.918±8.66 1.432±0.00 12.096±8.58 3.415±0.00 22.292±16.28 23.231±2.93 22.168±12.81
ENST00000396505 N/A N/A N/A 6.394±0.00 1.044±0.00 N/A 3.153±0.00 N/A N/A 3.872±0.00 N/A N/A N/A N/A
ENST00000525493 N/A N/A 2.079±0.00 13.510±0.00 N/A N/A 3.132±0.00 N/A N/A N/A 1.643±0.00 N/A N/A N/A
ENST00000525927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527132 3.258±0.00 11.773±0.00 N/A 63.041±38.73 2.672±0.00 6.633±5.33 3.059±0.00 3.599±3.10 5.234±3.67 N/A 0.862±0.00 22.580±0.00 25.344±0.00 16.409±0.93
ENST00000528188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170242 ENST00000305481 3.093±0.00 3.197±0.00 N/A 3.589±1.03 2.996±0.00 3.662±0.00 2.432±0.00 4.173±0.00 2.906±0.00 2.505±0.00 7.859±0.00 5.655±0.00 2.673±0.69 8.347±0.00
ENST00000339865 1.201±0.00 N/A 0.637±0.00 4.891±0.00 0.970±0.00 1.027±0.00 1.203±0.00 1.009±0.06 1.321±0.00 1.342±0.00 N/A 2.825±1.59 3.020±0.00 N/A
ENST00000399455 N/A N/A 1.238±0.00 3.291±0.00 1.806±0.00 N/A 2.802±1.55 0.795±0.00 N/A 2.599±0.00 3.973±0.12 N/A N/A N/A
ENST00000525078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.244±0.00 14.021±0.00 N/A
ENST00000525257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527733 9.439±0.00 7.992±0.00 3.757±0.00 3.076±0.47 7.617±0.59 7.253±0.37 4.254±1.32 6.196±0.33 7.187±1.89 7.000±0.62 8.863±7.71 8.910±4.08 9.196±6.28 24.800±12.26
ENST00000529813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255492 ENST00000530297 0.126±0.00 N/A N/A N/A N/A N/A 0.292±0.24 N/A N/A N/A N/A 0.408±0.17 0.183±0.00 0.091±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030772 ENSMUST00000033036 9.528±8.04 11.631±0.57 28.788±6.06 7.016±4.70 3.748±1.64 10.136±1.39 17.659±4.66 6.555±0.84 0.581±0.40 15.810±2.02 1.166±0.26 23.941±4.57 1.762±1.08 0.223±0.14
ENSMUSG00000059263 ENSMUST00000106653 9.509±2.37 7.967±1.49 14.498±2.16 22.164±4.21 9.410±2.69 10.247±2.05 8.745±2.19 8.306±1.62 7.923±1.80 11.247±1.30 34.140±7.75 15.228±8.63 44.248±21.38 62.891±39.51

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