C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebellar degeneration-related 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033169 Cdr2-001 ENSMUSG00000030878 10090 - 7:120957036-120982312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033169 20.298±5.08 9.661±2.82 15.764±1.82 8.416±2.78 8.966±1.05 9.903±2.33 4.783±1.14 16.618±1.02 32.985±36.16 11.468±2.07 0.947±0.13 9.574±4.67 17.452±4.99 17.820±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GX CIL_0006GX_0002 CGP 7:120917744-120982312
CIL_0008RG CIL_0008RG_0002 VISTA 7:120952178-121553246
CIL_0005WA CIL_0005WA_0002 CGP 7:120957036-121014787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268383 CDR2-001 protein_coding Homo_sapiens 0 1552
ENST00000561630 CDR2-003 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000563573 CDR2-005 protein_coding Homo_sapiens 0 276
ENST00000564542 CDR2-007 protein_coding Homo_sapiens 0 857
ENST00000567010 CDR2-004 protein_coding Homo_sapiens 0 279
ENST00000567406 CDR2-002 protein_coding Homo_sapiens 0 427

Loading