C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006GX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000058600-ENSG00000140743 CGP 9606 16:22297375-22437165
GeneTranscriptPositionBiotype
ENSG00000058600 (POLR3E)
polymerase (RNA) III (DNA directed) polypeptide E (80kD) 		ENST00000299853 (POLR3E-001) 22297409-22335103 protein_coding
ENST00000359210 (POLR3E-004) 22297433-22334025 protein_coding
ENST00000418581 (POLR3E-003) 22297427-22334061 protein_coding
ENST00000561494 (POLR3E-011) 22297434-22309463 nonsense_mediated_decay
ENST00000563024 (POLR3E-009) 22297434-22313660 protein_coding
ENST00000563282 (POLR3E-017) 22328319-22333696 retained_intron
ENST00000563766 (POLR3E-006) 22302470-22310321 retained_intron
ENST00000564061 (POLR3E-005) 22297455-22329091 retained_intron
ENST00000564209 (POLR3E-002) 22297411-22333935 protein_coding
ENST00000564256 (POLR3E-014) 22302974-22309945 processed_transcript
ENST00000564750 (POLR3E-007) 22302954-22333935 nonsense_mediated_decay
ENST00000564883 (POLR3E-013) 22297430-22309476 protein_coding
ENST00000565117 (POLR3E-008) 22331435-22334441 retained_intron
ENST00000565358 (POLR3E-012) 22297420-22313654 protein_coding
ENST00000565551 (POLR3E-016) 22308962-22318845 nonsense_mediated_decay
ENST00000567022 (POLR3E-010) 22302806-22308481 retained_intron
ENST00000569757 (POLR3E-015) 22314914-22322872 protein_coding
ENST00000569787 (POLR3E-018) 22316981-22325359 retained_intron
ENST00000615879 (POLR3E-201) 22297375-22335101 protein_coding
ENSG00000140743 (CDR2)
cerebellar degeneration-related protein 2, 62kDa 		ENST00000268383 (CDR2-001) 22345936-22374617 protein_coding
ENST00000561630 (CDR2-003) 22347634-22374437 nonsense_mediated_decay
ENST00000563573 (CDR2-005) 22349372-22433665 protein_coding
ENST00000564542 (CDR2-007) 22347475-22431596 protein_coding
ENST00000567010 (CDR2-004) 22349156-22349773 protein_coding
ENST00000567406 (CDR2-002) 22347755-22375090 protein_coding
ENST00000569045 (CDR2-006) 22364928-22437165 processed_transcript
ENSG00000230872 (AC092338.5)
 ENST00000420133 (AC092338.5-001) 22382436-22407428 unitary_pseudogene
ENSG00000260635 (RP11-21M24.3)
 ENST00000566764 (RP11-21M24.3-001) 22365121-22369047 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006GX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030880-ENSMUSG00000030878 CGP 10090 7:120917744-120982312
GeneTranscriptPositionBiotype
ENSMUSG00000030878 (Cdr2)
cerebellar degeneration-related 2 		ENSMUST00000033169 (Cdr2-001) 120957036-120982312 protein_coding
ENSMUST00000140247 (Cdr2-002) 120957036-120981790 processed_transcript
ENSMUSG00000030880 (Polr3e)
polymerase (RNA) III (DNA directed) polypeptide E 		ENSMUST00000033173 (Polr3e-201) 120917744-120947432 protein_coding
ENSMUST00000106483 (Polr3e-202) 120917744-120947432 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GX_0001ENSG00000058600ENST00000299853ENST00000359210ENST00000418581ENST00000561494ENST00000563024ENST00000563282ENST00000563766ENST00000564061ENST00000564209ENST00000564256ENST00000564750ENST00000564883ENST00000565117ENST00000565358ENST00000565551ENST00000567022ENST00000569757ENST00000569787ENST00000615879ENSG00000140743ENST00000268383ENST00000561630ENST00000563573ENST00000564542ENST00000567010ENST00000567406ENST00000569045ENSG00000230872ENST00000420133ENSG00000260635ENST00000566764CIL_0006GX_0002ENSMUSG00000030878ENSMUST00000033169ENSMUST00000140247ENSMUSG00000030880ENSMUST00000033173ENSMUST00000106483
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GX_0001ENSG00000058600ENST00000299853ENST00000359210ENST00000418581ENST00000563282ENST00000564061ENST00000564209ENST00000564750ENST00000565117ENST00000565551ENST00000615879ENSG00000140743ENST00000268383ENST00000564542ENSG00000230872ENST00000420133ENSG00000260635ENST00000566764CIL_0006GX_0002ENSMUSG00000030878ENSMUST00000033169ENSMUST00000140247ENSMUSG00000030880ENSMUST00000033173
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000058600 ENST00000299853 N/A N/A N/A 1.559±0.00 N/A N/A N/A 0.661±0.00 N/A 0.577±0.00 N/A 2.569±0.00 1.395±0.00 N/A
ENST00000359210 N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 1.134±0.07 0.717±0.00 N/A 4.891±0.00 3.235±0.00 N/A
ENST00000418581 7.303±0.00 3.747±0.00 N/A 1.260±0.00 4.047±0.00 2.351±0.00 2.326±0.00 N/A 1.747±0.81 N/A 13.761±0.00 4.898±3.46 5.470±2.15 6.709±0.18
ENST00000561494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.046±0.00 10.822±0.00 17.187±0.00
ENST00000563766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564061 N/A 2.350±0.00 N/A N/A N/A 0.862±0.00 N/A N/A N/A 0.792±0.00 1.165±0.00 1.376±0.29 N/A 1.871±0.00
ENST00000564209 4.814±0.00 4.212±0.00 1.344±0.00 1.275±0.00 3.052±1.97 N/A 1.938±0.00 N/A N/A 3.626±0.00 3.269±0.00 1.558±0.00 2.746±0.00 4.923±0.00
ENST00000564256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564750 N/A N/A 0.470±0.00 2.472±1.51 3.394±2.08 4.873±2.08 5.676±0.00 4.934±0.00 2.722±0.00 6.305±0.00 9.429±4.54 2.701±0.32 3.490±0.00 3.388±0.00
ENST00000564883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565117 N/A 2.559±0.00 1.219±0.00 1.717±0.14 2.064±0.00 1.439±0.00 0.882±0.00 1.956±0.00 1.356±0.69 1.801±0.00 N/A 2.341±0.45 N/A 2.823±1.32
ENST00000565358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565551 N/A N/A N/A N/A N/A N/A N/A 1.844±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615879 N/A N/A N/A N/A N/A 1.070±0.00 N/A 1.576±0.00 0.745±0.00 N/A N/A N/A N/A 1.234±0.00
ENSG00000140743 ENST00000268383 9.243±0.00 12.359±0.00 4.508±0.00 5.489±3.41 7.359±2.21 8.783±4.66 1.439±0.54 6.411±4.21 4.929±1.37 17.998±14.00 1.742±1.10 13.208±6.56 7.319±1.81 40.137±22.28
ENST00000561630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.978±0.00
ENST00000567010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230872 ENST00000420133 0.118±0.00 0.092±0.00 N/A 0.193±0.15 0.075±0.00 0.047±0.00 N/A 0.216±0.08 N/A 0.014±0.00 0.105±0.00 0.145±0.00 0.078±0.06 0.200±0.02
ENSG00000260635 ENST00000566764 N/A 0.320±0.00 N/A N/A 0.447±0.35 0.146±0.00 0.089±0.00 0.094±0.00 N/A 0.249±0.00 N/A N/A N/A 0.202±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030878 ENSMUST00000033169 20.298±5.08 9.661±2.82 15.764±1.82 8.416±2.78 8.966±1.05 9.903±2.33 4.783±1.14 16.618±1.02 32.985±36.16 11.468±2.07 0.947±0.13 9.574±4.67 17.452±4.99 17.820±1.39
ENSMUST00000140247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.693±0.19 3.847±0.93 3.135±0.00 N/A
ENSMUSG00000030880 ENSMUST00000033173 4.765±0.90 6.420±2.10 5.722±0.97 6.394±0.79 5.210±1.64 6.676±0.92 1.688±0.39 10.814±0.65 4.452±1.87 5.602±0.13 2.904±0.23 10.395±2.66 13.433±3.07 8.494±2.42
ENSMUST00000106483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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