C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, RAN-binding domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033265 Zranb1-201 ENSMUSG00000030967 10090 + 7:132949584-132983996 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000033265
Transcript ID Adipose Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000033265 3.745±0.59 10.298±0.00 3.885±2.27 4.352±1.15 5.458±1.02 5.730±2.34 5.857±1.39 24.036±12.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00084V CIL_00084V_0002 VISTA 7:132507589-133108550
CIL_0001V2 CIL_0001V2_0002 CGP 7:132859225-132986391
CIL_0009BC CIL_0009BC_0002 VISTA 7:132889780-133490441
CIL_0003UU CIL_0003UU_0002 CGP 7:132931142-133124354

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0007010 ISS cytoskeleton organization
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016477 ISS cell migration
GO:0022604 ISS regulation of cell morphogenesis
GO:0030177 ISS positive regulation of Wnt signaling pathway
GO:0035523 ISS protein K29-linked deubiquitination
GO:0070536 ISS protein K63-linked deubiquitination
GO:1990168 ISS protein K33-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337195 CTBP2-001 protein_coding Homo_sapiens 0 329
ENST00000359653 ZRANB1-001 protein_coding Homo_sapiens 0 3210
ENST00000471421 ZRANB1-002 processed_transcript Homo_sapiens 0 453

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