C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-terminal binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033269 Ctbp2-001 ENSMUSG00000030970 10090 - 7:132987621-133123367 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033269 12.436±6.23 10.241±1.01 22.181±4.88 28.310±0.73 8.276±0.77 19.342±3.01 4.991±0.27 11.677±0.85 3.315±0.81 11.912±0.00 3.443±0.51 20.373±3.84 15.452±4.63 7.468±1.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00084V CIL_00084V_0002 VISTA 7:132507589-133108550
CIL_0009BC CIL_0009BC_0002 VISTA 7:132889780-133490441
CIL_0003UU CIL_0003UU_0002 CGP 7:132931142-133124354
CIL_0007P4 CIL_0007P4_0002 UCNEbase 7:132987258-133190227
CIL_0001V4 CIL_0001V4_0002 CGP 7:132987563-133602115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003713 IGI transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0017053 IDA transcriptional repressor complex
GO:0030054 IEA cell junction
GO:0035563 IMP positive regulation of chromatin binding
GO:0042974 IPI retinoic acid receptor binding
GO:0045202 IDA synapse
GO:0045892 IPI negative regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048386 IMP positive regulation of retinoic acid receptor signaling pathway
GO:0050872 IDA white fat cell differentiation
GO:0051287 IEA NAD binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309035 CTBP2-006 protein_coding Homo_sapiens 0 1977
ENST00000334808 CTBP2-005 protein_coding Homo_sapiens 0 1890
ENST00000337195 CTBP2-001 protein_coding Homo_sapiens 0 2447
ENST00000395705 CTBP2-015 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000411419 CTBP2-011 protein_coding Homo_sapiens 0 2121
ENST00000422584 CTBP2P8-001 processed_pseudogene Homo_sapiens 0 1504
ENST00000460976 CTBP2-004 processed_transcript Homo_sapiens 0 473
ENST00000476817 CTBP2-010 processed_transcript Homo_sapiens 0 235
ENST00000486955 CTBP2-012 retained_intron Homo_sapiens 0 448
ENST00000493552 CTBP2-009 processed_transcript Homo_sapiens 0.000001 55
ENST00000494626 CTBP2-002 protein_coding Homo_sapiens 0 2054
ENST00000513884 CTBP2P4-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000526402 CTBP2P6-001 processed_pseudogene Homo_sapiens 0 785
ENST00000531469 CTBP2-003 protein_coding Homo_sapiens 0 2121
ENST00000585629 CTBP2P3-001 processed_pseudogene Homo_sapiens 0 1129
ENST00000593270 CTBP2P7-001 processed_pseudogene Homo_sapiens 0 876

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