C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWA-70 protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033325 Swap70-201 ENSMUSG00000031015 10090 + 7:110221703-110283503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033325 7.723±3.39 8.007±0.32 6.640±0.52 2.007±0.40 17.220±9.72 8.049±3.16 2.610±1.14 5.219±2.00 2.871±1.59 26.301±1.89 1.783±0.63 11.303±3.06 4.375±2.40 1.268±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0004J5 CIL_0004J5_0002 CGP 7:110122350-110283503
CIL_0004J8 CIL_0004J8_0002 CGP 7:110221703-110614922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IDA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0016444 IDA somatic cell DNA recombination
GO:0042995 IEA cell projection
GO:0045190 IDA isotype switching

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318950 SWAP70-001 protein_coding Homo_sapiens 0 2254
ENST00000447399 SWAP70-002 protein_coding Homo_sapiens 0 1676
ENST00000524817 SWAP70-003 retained_intron Homo_sapiens 0 1772
ENST00000526358 SWAP70-004 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000531814 SWAP70-005 retained_intron Homo_sapiens 0 346
ENST00000534562 SWAP70-007 nonsense_mediated_decay Homo_sapiens 0 857
ENST00000534662 SWAP70-006 protein_coding Homo_sapiens 0 917

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