C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033502 Gata1-001 ENSMUSG00000031162 10090 - X:7959260-7967910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000033502
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000033502 0.234±0.15 0.415±0.34 0.106±0.02 0.117±0.02 0.587±0.06 0.037±0.02 0.113±0.05 0.031±0.01 53.672±48.10 0.599±0.22 1.391±0.98 4.405±2.47 2.921±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029K CIL_00029K_0002 CGP X:7930120-7978071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001701 IMP in utero embryonic development
GO:0002039 IPI p53 binding
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007267 IMP cell-cell signaling
GO:0008270 IEA zinc ion binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0008301 IDA DNA binding, bending
GO:0008584 IEA male gonad development
GO:0010559 IMP regulation of glycoprotein biosynthetic process
GO:0010724 IDA regulation of definitive erythrocyte differentiation
GO:0017053 IEA transcriptional repressor complex
GO:0030099 IMP myeloid cell differentiation
GO:0030218 IMP erythrocyte differentiation
GO:0030219 IGI megakaryocyte differentiation
GO:0030220 IMP platelet formation
GO:0030221 IEA basophil differentiation
GO:0030222 IEA eosinophil differentiation
GO:0030502 IMP negative regulation of bone mineralization
GO:0031490 ISS chromatin DNA binding
GO:0033690 IMP positive regulation of osteoblast proliferation
GO:0035162 IMP embryonic hemopoiesis
GO:0035854 IEA eosinophil fate commitment
GO:0043066 IMP negative regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045648 IEA positive regulation of erythrocyte differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048468 IMP cell development
GO:0048821 IEA erythrocyte development
GO:0050731 IMP positive regulation of peptidyl-tyrosine phosphorylation
GO:0070527 IMP platelet aggregation
GO:0070742 IEA C2H2 zinc finger domain binding
GO:0071733 IDA transcriptional activation by promoter-enhancer looping
GO:0097028 IDA dendritic cell differentiation
GO:0097067 IEA cellular response to thyroid hormone stimulus
GO:2000678 IEA negative regulation of transcription regulatory region DNA binding
GO:2001240 IEA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376665 GATA1-002 protein_coding Homo_sapiens 0 880
ENST00000376670 GATA1-001 protein_coding Homo_sapiens 0 1218

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