C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ER lipid raft associated 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033873 Erlin2-201 ENSMUSG00000031483 10090 + 8:27023799-27039433 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033873 18.643±3.74 13.339±1.43 18.661±1.34 16.658±8.02 13.061±2.13 26.692±4.00 6.901±0.98 38.709±3.08 9.583±1.25 16.931±1.73 1.697±0.52 17.795±2.77 32.230±13.97 10.210±2.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0002 VISTA 8:26613996-27214881
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0002IU CIL_0002IU_0002 CGP 8:26977336-27039433
CIL_0002IV CIL_0002IV_0002 CGP 8:27023799-27056131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030433 IEA ER-associated ubiquitin-dependent protein catabolic process
GO:0043234 ISO protein complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276461 ERLIN2-001 protein_coding Homo_sapiens 0 1360
ENST00000335171 ERLIN2-008 protein_coding Homo_sapiens 0 614
ENST00000397228 ERLIN2-002 protein_coding Homo_sapiens 0 686
ENST00000518526 ERLIN2-014 protein_coding Homo_sapiens 0 652
ENST00000518586 ERLIN2-007 protein_coding Homo_sapiens 0 614
ENST00000519638 ERLIN2-010 protein_coding Homo_sapiens 0 1312
ENST00000519872 ERLIN2-013 retained_intron Homo_sapiens 0 375
ENST00000521644 ERLIN2-009 protein_coding Homo_sapiens 0 1299
ENST00000521993 ERLIN2-018 retained_intron Homo_sapiens 0 579
ENST00000523107 ERLIN2-015 protein_coding Homo_sapiens 0 612
ENST00000523887 ERLIN2-006 protein_coding Homo_sapiens 0 660

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