C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor (ligand) superfamily, member 13b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033892 Tnfsf13b-201 ENSMUSG00000031497 10090 + 8:10006843-10035441 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033892 2.455±0.97 3.230±0.40 3.891±0.79 0.171±0.10 3.609±2.26 6.050±0.90 0.641±0.24 1.212±0.16 0.111±0.04 14.591±2.36 0.201±0.17 2.145±1.03 0.098±0.03 0.307±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077K CIL_00077K_0002 CGP 8:9977707-10035441
CIL_00077M CIL_00077M_0002 CGP 8:10006843-10634741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001782 IMP B cell homeostasis
GO:0002636 IMP positive regulation of germinal center formation
GO:0005125 IEA cytokine activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006955 IEA immune response
GO:0016021 IEA integral component of membrane
GO:0030890 IDA positive regulation of B cell proliferation
GO:0031295 IDA T cell costimulation
GO:0031296 IDA B cell costimulation
GO:0042102 IDA positive regulation of T cell proliferation
GO:0048305 IGI immunoglobulin secretion
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050776 IMP regulation of immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375887 TNFSF13B-001 protein_coding Homo_sapiens 0 313
ENST00000430559 TNFSF13B-201 protein_coding Homo_sapiens 0 255
ENST00000479435 TNFSF13B-002 processed_transcript Homo_sapiens 0 189

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