C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033899 Col4a2-001 ENSMUSG00000031503 10090 + 8:11312805-11449287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033899 68.704±16.80 37.082±3.19 74.399±14.13 19.088±7.46 43.910±6.59 20.064±1.96 24.006±4.81 16.417±1.00 2.776±1.71 107.303±21.29 13.674±2.92 45.981±29.29 213.697±111.35 1.952±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077O CIL_00077O_0002 CGP 8:10986980-11312826
CIL_00058N CIL_00058N_0003 CGP 8:11198423-11449287
CIL_00058M CIL_00058M_0003 CGP 8:11312805-11478638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane
GO:0006351 IDA transcription, DNA-templated
GO:0016525 ISS negative regulation of angiogenesis
GO:0031012 IDA extracellular matrix
GO:0035987 IEA endodermal cell differentiation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0070062 IEA extracellular vesicular exosome
GO:0071560 IEP cellular response to transforming growth factor beta stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081513 col4a2-201 protein_coding Danio_rerio 0 387
ENSDART00000011757 col4a2-001 protein_coding Danio_rerio 0 387
ENST00000360467 COL4A2-001 protein_coding Homo_sapiens 0 4220
ENST00000463084 COL4A2-003 processed_transcript Homo_sapiens 0 571
ENST00000480609 COL4A2-009 retained_intron Homo_sapiens 0 549

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