C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sin3 associated polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034022 Sap30-001 ENSMUSG00000031609 10090 - 8:57482707-57487860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034022 4.836±3.18 10.519±2.64 11.108±1.70 17.364±11.95 4.625±2.83 8.239±0.96 3.372±1.12 23.790±6.00 6.890±4.90 5.996±1.43 2.602±0.49 9.065±3.47 5.411±1.12 8.958±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080O CIL_00080O_0002 VISTA 8:56891052-57495815
CIL_0008BZ CIL_0008BZ_0002 VISTA 8:57035224-57635792
CIL_0008VG CIL_0008VG_0002 VISTA 8:57047180-57651136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016580 ISA Sin3 complex
GO:0035914 IMP skeletal muscle cell differentiation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296504 SAP30-001 protein_coding Homo_sapiens 0 935
ENST00000604339 RP11-392O18.2-001 processed_pseudogene Homo_sapiens 0 588

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