C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034053 Pdlim3-201 ENSMUSG00000031636 10090 + 8:45885485-45919546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034053 66.826±58.05 0.639±0.13 461.798±15.37 3.125±1.89 12.964±9.00 82.529±7.02 17.021±3.30 2.285±0.41 0.594±0.39 15.812±4.59 103.141±45.14 45.685±15.89 6.454±13.20 3.950±2.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0007015 IDA actin filament organization
GO:0007507 IMP heart development
GO:0008092 IPI cytoskeletal protein binding
GO:0008270 IEA zinc ion binding
GO:0008307 IDA structural constituent of muscle
GO:0015629 IPI actin cytoskeleton
GO:0030018 TAS Z disc

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284767 PDLIM3-201 protein_coding Homo_sapiens 0 416
ENST00000284770 PDLIM3-001 protein_coding Homo_sapiens 0 416
ENST00000284771 PDLIM3-002 protein_coding Homo_sapiens 0 1131
ENST00000504011 PDLIM3-003 retained_intron Homo_sapiens 0 682
ENST00000504355 PDLIM3-008 retained_intron Homo_sapiens 0 324
ENST00000505886 PDLIM3-006 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000512380 PDLIM3-010 retained_intron Homo_sapiens 0 484
ENST00000514142 PDLIM3-004 retained_intron Homo_sapiens 0 278
ENST00000515261 PDLIM3-007 retained_intron Homo_sapiens 0 414

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