C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 domain containing ring finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034060 Sh3rf1-201 ENSMUSG00000031642 10090 + 8:61224171-61396072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034060 5.171±1.63 6.350±0.25 6.810±0.04 8.738±2.81 4.238±1.76 11.533±0.59 1.510±0.10 6.421±1.74 0.729±0.13 11.135±0.81 0.335±0.04 7.879±2.48 2.468±0.59 1.057±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KO CIL_0006KO_0002 CGP 8:60993195-61396072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 IEA cytosol
GO:0008270 IEA zinc ion binding
GO:0043066 IEA negative regulation of apoptotic process
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0046328 IEA regulation of JNK cascade
GO:2001237 IEA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284637 SH3RF1-001 protein_coding Homo_sapiens 0 3367
ENST00000502315 SH3RF1-004 protein_coding Homo_sapiens 0 442
ENST00000508685 SH3RF1-003 processed_transcript Homo_sapiens 0 2222
ENST00000510806 SH3RF1-005 protein_coding Homo_sapiens 0 383
ENST00000511421 SH3RF1-002 nonsense_mediated_decay Homo_sapiens 0 941

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