C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006KO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000022350-ENSDARG00000070470 CGP 7955 20:23658746-23819066
GeneTranscriptPositionBiotype
ENSDARG00000022350 (nek1)
NIMA (never in mitosis gene a)-related kinase 1 		ENSDART00000035239 (nek1-001) 23658748-23696116 protein_coding
ENSDART00000152910 (nek1-002) 23669147-23670903 retained_intron
ENSDART00000155262 (nek1-201) 23658746-23694922 protein_coding
ENSDARG00000070470 (sh3rf1)
SH3 domain containing ring finger 1 		ENSDART00000050559 (sh3rf1-001) 23724673-23819066 protein_coding
ENSDARG00000085051 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000120451 (5S_rRNA.970-201) 23749052-23749168 rRNA
CIL_0006KO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031644-ENSMUSG00000031642 CGP 10090 8:60993195-61396072
GeneTranscriptPositionBiotype
ENSMUSG00000031642 (Sh3rf1)
SH3 domain containing ring finger 1 		ENSMUST00000034060 (Sh3rf1-201) 61224171-61396072 protein_coding
ENSMUSG00000031644 (Nek1)
NIMA (never in mitosis gene a)-related expressed kinase 1 		ENSMUST00000034065 (Nek1-001) 60993195-61131346 protein_coding
ENSMUST00000120689 (Nek1-002) 60993195-61131339 protein_coding
ENSMUST00000125717 (Nek1-006) 60993200-61044543 retained_intron
ENSMUST00000140444 (Nek1-004) 60993241-61030059 retained_intron
ENSMUST00000142601 (Nek1-007) 61049835-61089455 protein_coding
ENSMUST00000154313 (Nek1-005) 60993241-61030600 retained_intron
ENSMUST00000155664 (Nek1-003) 60993239-61107351 retained_intron
ENSMUSG00000056943 (Gm10015)
predicted gene 10015 		ENSMUST00000072570 (Gm10015-201) 61364019-61364483 processed_pseudogene
ENSMUSG00000080956 (Gm16179)
predicted gene 16179 		ENSMUST00000120685 (Gm16179-001) 61112130-61112502 processed_pseudogene
ENSMUSG00000086681 (Gm16178)
predicted gene 16178 		ENSMUST00000129408 (Gm16178-001) 61117605-61194648 antisense
ENSMUSG00000099419 (RP23-5F21.1)
RIKEN cDNA 1700001D01 gene 		ENSMUST00000188654 (RP23-5F21.1-001) 61281522-61288872 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KO_0001ENSDARG00000022350ENSDART00000035239ENSDART00000152910ENSDART00000155262ENSDARG00000070470ENSDART00000050559ENSDARG00000085051ENSDART00000120451CIL_0006KO_0002ENSMUSG00000031642ENSMUST00000034060ENSMUSG00000031644ENSMUST00000034065ENSMUST00000120689ENSMUST00000125717ENSMUST00000140444ENSMUST00000142601ENSMUST00000154313ENSMUST00000155664ENSMUSG00000056943ENSMUST00000072570ENSMUSG00000080956ENSMUST00000120685ENSMUSG00000086681ENSMUST00000129408ENSMUSG00000099419ENSMUST00000188654
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KO_0001ENSDARG00000022350ENSDART00000035239ENSDART00000155262ENSDARG00000070470ENSDART00000050559ENSDARG00000085051ENSDART00000120451CIL_0006KO_0002ENSMUSG00000031642ENSMUST00000034060ENSMUSG00000031644ENSMUST00000034065ENSMUST00000120689ENSMUST00000125717ENSMUST00000142601ENSMUST00000155664ENSMUSG00000056943ENSMUST00000072570ENSMUSG00000080956ENSMUST00000120685ENSMUSG00000086681ENSMUST00000129408ENSMUSG00000099419ENSMUST00000188654
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022350 ENSDART00000035239 N/A N/A N/A 5.875±0.33 N/A N/A 0.576±0.33 1.968±0.50 0.143±0.00 N/A 0.329±0.00 N/A N/A N/A
ENSDART00000152910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155262 N/A N/A N/A N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070470 ENSDART00000050559 N/A N/A N/A 5.532±0.97 N/A N/A 2.174±0.31 3.089±0.56 0.642±0.00 N/A 1.323±0.00 N/A N/A N/A
ENSDARG00000085051 ENSDART00000120451 N/A N/A N/A 7.262±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031642 ENSMUST00000034060 5.171±1.63 6.350±0.25 6.810±0.04 8.738±2.81 4.238±1.76 11.533±0.59 1.510±0.10 6.421±1.74 0.729±0.13 11.135±0.81 0.335±0.04 7.879±2.48 2.468±0.59 1.057±0.29
ENSMUSG00000031644 ENSMUST00000034065 0.740±0.36 N/A 2.423±0.74 3.999±1.52 0.460±0.26 0.574±0.19 0.498±0.17 0.509±0.30 1.379±0.95 1.117±0.26 0.583±0.16 2.530±1.97 1.517±0.57 5.731±2.18
ENSMUST00000120689 0.550±0.06 N/A 0.685±0.12 2.360±1.67 0.315±0.07 N/A 0.304±0.10 0.508±0.00 0.540±0.07 0.730±0.00 0.450±0.14 4.487±0.00 1.020±0.65 N/A
ENSMUST00000125717 2.569±1.35 16.717±0.73 N/A N/A 9.825±4.59 6.112±0.49 0.966±0.00 1.984±0.79 1.476±0.66 7.568±1.60 N/A 15.469±3.49 N/A 4.321±1.37
ENSMUST00000140444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142601 N/A N/A N/A 14.022±0.00 N/A N/A N/A N/A N/A N/A N/A 12.027±0.00 6.922±1.53 N/A
ENSMUST00000154313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.139±0.00
ENSMUSG00000056943 ENSMUST00000072570 N/A N/A 0.065±0.04 0.153±0.10 N/A 0.276±0.00 0.248±0.05 N/A 0.067±0.06 0.168±0.03 N/A 0.080±0.00 0.132±0.03 0.115±0.00
ENSMUSG00000080956 ENSMUST00000120685 0.590±0.27 0.393±0.00 0.107±0.04 0.365±0.18 N/A 0.553±0.18 0.144±0.00 0.371±0.00 0.097±0.08 0.185±0.00 N/A 1.183±1.22 0.186±0.05 0.534±0.35
ENSMUSG00000086681 ENSMUST00000129408 0.204±0.13 1.228±0.24 0.090±0.00 0.236±0.18 0.263±0.05 0.160±0.01 0.071±0.00 0.268±0.22 0.124±0.04 0.261±0.10 N/A 0.548±0.14 0.072±0.00 0.343±0.27
ENSMUSG00000099419 ENSMUST00000188654 0.142±0.00 N/A N/A N/A 0.238±0.00 N/A N/A 0.097±0.00 0.081±0.04 0.189±0.00 N/A 0.069±0.00 N/A 0.415±0.00

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