C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034096 Setd6-001 ENSMUSG00000031671 10090 + 8:95715932-95719010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034096 2.939±0.72 13.060±2.59 5.822±0.45 6.634±3.09 3.027±2.33 4.402±1.75 2.044±0.35 4.016±0.41 4.517±2.05 3.669±0.39 4.279±0.50 5.173±2.52 13.526±12.74 1.051±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004IY CIL_0004IY_0002 CGP 8:95676980-95719010
CIL_0004IZ CIL_0004IZ_0002 CGP 8:95715915-95807462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0016279 ISS protein-lysine N-methyltransferase activity
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0032088 ISS negative regulation of NF-kappaB transcription factor activity
GO:0050727 ISS regulation of inflammatory response
GO:0051059 IEA NF-kappaB binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219315 SETD6-003 protein_coding Homo_sapiens 0 1279
ENST00000310682 SETD6-001 protein_coding Homo_sapiens 0 1347
ENST00000394266 SETD6-006 protein_coding Homo_sapiens 0 854
ENST00000418480 SETD6-010 processed_transcript Homo_sapiens 0 719
ENST00000422445 SETD6-004 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000427443 SETD6-002 nonsense_mediated_decay Homo_sapiens 0 719
ENST00000447443 SETD6-009 protein_coding Homo_sapiens 0 281
ENST00000463954 SETD6-012 retained_intron Homo_sapiens 0 638
ENST00000467320 SETD6-011 retained_intron Homo_sapiens 0 324
ENST00000491587 SETD6-013 retained_intron Homo_sapiens 0 296

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