C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034131 Vps35-201 ENSMUSG00000031696 10090 - 8:85260397-85299513 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034131 24.580±0.91 9.446±0.98 42.594±3.76 34.518±3.40 16.136±2.76 10.857±0.92 14.242±0.90 24.166±1.85 22.266±11.82 18.137±1.28 18.060±1.14 14.687±9.97 59.150±17.30 17.679±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VM CIL_0002VM_0002 CGP 8:85260397-85308278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0005829 IEA cytosol
GO:0006624 ISA vacuolar protein processing
GO:0015031 IEA protein transport
GO:0016021 ISA integral component of membrane
GO:0030904 IEA retromer complex
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299138 VPS35-001 protein_coding Homo_sapiens 0 3779
ENST00000561713 VPS35-005 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000562420 VPS35-011 retained_intron Homo_sapiens 0 771
ENST00000563400 CTD-2144E22.10-001 unprocessed_pseudogene Homo_sapiens 0 1943
ENST00000563884 VPS35-006 retained_intron Homo_sapiens 0 438
ENST00000563984 VPS35-004 retained_intron Homo_sapiens 2e-38 163
ENST00000568612 VPS35-008 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000568642 VPS35-012 processed_transcript Homo_sapiens 0 538
ENST00000568784 VPS35-002 nonsense_mediated_decay Homo_sapiens 0 3751
ENST00000569950 VPS35-003 retained_intron Homo_sapiens 0 1022

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