C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: katanin p80 (WD40-containing) subunit B 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034239 Katnb1-201 ENSMUSG00000031787 10090 + 8:95081201-95099874 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034239 8.248±0.90 10.380±0.71 5.452±0.81 10.621±1.34 6.876±2.79 10.972±1.65 3.543±0.49 10.014±0.91 3.237±2.43 9.389±0.94 2.335±0.51 13.787±5.21 6.472±1.56 66.046±26.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S2 CIL_0004S2_0002 CGP 8:95055103-95099874
CIL_0004S1 CIL_0004S1_0002 CGP 8:95081201-95142540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IEA spindle pole
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005874 IEA microtubule
GO:0006200 IEA ATP catabolic process
GO:0007026 IEA negative regulation of microtubule depolymerization
GO:0007079 IEA mitotic chromosome movement towards spindle pole
GO:0008017 IEA microtubule binding
GO:0008352 IEA katanin complex
GO:0008568 IEA microtubule-severing ATPase activity
GO:0010942 IEA positive regulation of cell death
GO:0010976 IEA positive regulation of neuron projection development
GO:0016020 IEA membrane
GO:0030424 IDA axon
GO:0030426 IEA growth cone
GO:0030496 IEA midbody
GO:0031117 IEA positive regulation of microtubule depolymerization
GO:0043025 IEA neuronal cell body
GO:0045502 IDA dynein binding
GO:0046982 IEA protein heterodimerization activity
GO:0051013 IEA microtubule severing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379655 KIFC3-001 protein_coding Homo_sapiens 0.00002 57
ENST00000379661 KATNB1-001 protein_coding Homo_sapiens 0 2776
ENST00000445690 KIFC3-003 protein_coding Homo_sapiens 0.00006 55
ENST00000465878 KIFC3-002 protein_coding Homo_sapiens 0.00002 57
ENST00000562542 KATNB1-007 retained_intron Homo_sapiens 0 316
ENST00000562592 KATNB1-003 protein_coding Homo_sapiens 0 848
ENST00000563127 KATNB1-006 retained_intron Homo_sapiens 0 881
ENST00000563462 KATNB1-008 protein_coding Homo_sapiens 0 499
ENST00000566611 KATNB1-002 retained_intron Homo_sapiens 0 1037
ENST00000566726 KATNB1-010 protein_coding Homo_sapiens 0 750
ENST00000566785 KATNB1-004 protein_coding Homo_sapiens 0 516
ENST00000569018 KATNB1-009 retained_intron Homo_sapiens 0 396
ENST00000569627 KATNB1-005 protein_coding Homo_sapiens 0 590

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