C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: katanin p80 (WD repeat containing) subunit B 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379661 KATNB1-001 ENSG00000140854 9606 + 16:57735730-57757250 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379661 6.326±0.00 7.103±0.00 0.905±0.00 9.963±5.67 4.004±3.49 3.101±0.00 1.307±0.86 2.415±2.04 2.297±0.00 3.686±2.92 3.304±0.00 7.853±3.37 8.702±1.83 23.000±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S2 CIL_0004S2_0001 CGP 16:57694793-57757250
CIL_0004S1 CIL_0004S1_0001 CGP 16:57735730-57863053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IEA centrosome
GO:0005874 IEA microtubule
GO:0006200 IDA ATP catabolic process
GO:0006605 NAS protein targeting
GO:0007026 IMP negative regulation of microtubule depolymerization
GO:0007079 IEA mitotic chromosome movement towards spindle pole
GO:0008017 NAS microtubule binding
GO:0008352 TAS katanin complex
GO:0008568 IDA microtubule-severing ATPase activity
GO:0010942 IEA positive regulation of cell death
GO:0010976 IEA positive regulation of neuron projection development
GO:0016020 IDA membrane
GO:0030424 IEA axon
GO:0030426 IEA growth cone
GO:0030496 IEA midbody
GO:0031117 IMP positive regulation of microtubule depolymerization
GO:0043025 IEA neuronal cell body
GO:0045502 IEA dynein binding
GO:0046982 IPI protein heterodimerization activity
GO:0051013 IEA microtubule severing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034239 Katnb1-201 protein_coding Mus_musculus 0 2776

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