C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-carotene oxygenase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034308 Bcmo1-001 ENSMUSG00000031845 10090 + 8:117095854-117133720 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034308
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034308 0.066±0.03 0.044±0.01 0.026±0.02 0.167±0.01 0.345±0.10 0.013±0.00 1.086±0.29 3.027±0.71 0.106±0.02 0.017±0.00 0.117±0.05 2.156±1.78 7.082±3.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019F CIL_00019F_0002 CGP 8:117095854-117205834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 IDA retinoid metabolic process
GO:0003834 ISS beta-carotene 15,15'-monooxygenase activity
GO:0004497 IEA monooxygenase activity
GO:0042572 IEA retinol metabolic process
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258168 BCO1-001 protein_coding Homo_sapiens 0 1594
ENST00000563804 BCO1-002 nonsense_mediated_decay Homo_sapiens 0 1247
ENST00000564552 BCO1-003 protein_coding Homo_sapiens 0 536

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