C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenosine deaminase, tRNA-specific 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034427 Adat1-001 ENSMUSG00000031949 10090 - 8:111966908-111992302 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034427 1.251±0.47 0.891±0.27 0.825±0.05 1.250±0.58 0.659±0.26 0.563±0.35 0.581±0.19 1.014±0.12 1.376±0.43 0.622±0.17 0.658±0.21 1.668±0.43 1.339±0.80 0.870±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GX CIL_0001GX_0002 CGP 8:111940703-111992302
CIL_0002D7 CIL_0002D7_0002 CGP 8:111966908-112011323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005575 ND cellular_component
GO:0008033 ISS tRNA processing
GO:0008251 ISS tRNA-specific adenosine deaminase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307921 ADAT1-001 protein_coding Homo_sapiens 0 1194
ENST00000564657 ADAT1-006 protein_coding Homo_sapiens 0 361
ENST00000565109 ADAT1-007 processed_transcript Homo_sapiens 0 250
ENST00000566445 ADAT1-002 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000567281 ADAT1-008 protein_coding Homo_sapiens 0 536
ENST00000568001 ADAT1-009 nonsense_mediated_decay Homo_sapiens 0 250

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