C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034430 Chst5-201 ENSMUSG00000031952 10090 - 8:111889135-111910199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034430
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034430 0.055±0.00 0.110±0.05 1.120±0.64 0.136±0.06 0.817±0.16 0.013±0.00 0.034±0.01 0.030±0.03 3.339±0.67 0.032±0.01 0.268±0.16 0.420±0.23 0.255±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002T5 CIL_0002T5_0002 CGP 8:111864898-111910199
CIL_0001FX CIL_0001FX_0003 CGP 8:111889135-111933791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0001517 IDA N-acetylglucosamine 6-O-sulfotransferase activity
GO:0005975 IEA carbohydrate metabolic process
GO:0006044 IDA N-acetylglucosamine metabolic process
GO:0006790 IDA sulfur compound metabolic process
GO:0016021 IEA integral component of membrane
GO:0018146 IDA keratan sulfate biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332272 CHST6-003 protein_coding Homo_sapiens 0 1002
ENST00000336257 CHST5-001 protein_coding Homo_sapiens 0 763
ENST00000390664 CHST6-001 protein_coding Homo_sapiens 0 1002
ENST00000460606 RP11-77K12.7-001 nonsense_mediated_decay Homo_sapiens 0 763

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