C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, kainate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034515 Grik4-201 ENSMUSG00000032017 10090 - 9:42520412-42808699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034515
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034515 0.116±0.10 0.807±0.12 0.133±0.02 2.763±1.55 0.034±0.02 0.205±0.07 0.019±0.02 0.029±0.02 0.179±0.19 0.180±0.09 0.028±0.01 0.539±0.17 0.119±0.09 0.973±0.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0015277 IBA kainate selective glutamate receptor activity
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0032983 IPI kainate selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042734 IDA presynaptic membrane
GO:0045202 IDA synapse
GO:0045211 IDA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262895 GRIK5-002 protein_coding Homo_sapiens 0 822
ENST00000301218 GRIK5-001 protein_coding Homo_sapiens 0 822
ENST00000438375 GRIK4-003 protein_coding Homo_sapiens 0 4061
ENST00000454993 GRIK5-003 retained_intron Homo_sapiens 0 804
ENST00000526536 GRIK4-004 processed_transcript Homo_sapiens 0 375
ENST00000527130 GRIK4-006 processed_transcript Homo_sapiens 1e-24 117
ENST00000527524 GRIK4-001 protein_coding Homo_sapiens 0 4060
ENST00000530172 GRIK4-007 retained_intron Homo_sapiens 0 243
ENST00000533291 GRIK4-002 retained_intron Homo_sapiens 0 3336
ENST00000593562 GRIK5-004 protein_coding Homo_sapiens 0 822

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