C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, kainate 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262895 GRIK5-002 ENSG00000105737 9606 - 19:41998321-42065770 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000262895
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000262895 0.566±0.00 2.488±0.00 11.824±0.00 0.398±0.00 3.819±0.00 0.509±0.37 4.208±0.00 0.868±0.00 0.452±0.00 4.511±4.76 8.367±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YN CIL_0003YN_0001 CGP 19:41966582-42069498
CIL_0003XZ CIL_0003XZ_0001 CGP 19:41998321-42081565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006621 IEA protein retention in ER lumen
GO:0007165 IEA signal transduction
GO:0007268 TAS synaptic transmission
GO:0008066 IEA glutamate receptor activity
GO:0008328 IEA ionotropic glutamate receptor complex
GO:0014069 IEA postsynaptic density
GO:0015277 IDA kainate selective glutamate receptor activity
GO:0016020 IEA membrane
GO:0017124 IEA SH3 domain binding
GO:0030054 IEA cell junction
GO:0030165 IEA PDZ domain binding
GO:0030424 IEA axon
GO:0030425 IBA dendrite
GO:0031630 IEA regulation of synaptic vesicle fusion to presynaptic membrane
GO:0032983 IBA kainate selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0042391 IEA regulation of membrane potential
GO:0042734 IBA presynaptic membrane
GO:0042802 IEA identical protein binding
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043113 IEA receptor clustering
GO:0043195 IEA terminal bouton
GO:0043204 IEA perikaryon
GO:0043525 IEA positive regulation of neuron apoptotic process
GO:0045211 IBA postsynaptic membrane
GO:0051649 IEA establishment of localization in cell
GO:0060079 IEA regulation of excitatory postsynaptic membrane potential
GO:0071333 IEA cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003468 Grik5-201 protein_coding Mus_musculus 0 4185
ENSDART00000114472 GRIK5 (2 of 2)-201 protein_coding Danio_rerio 0 1288
ENSDART00000122055 grik5-202 protein_coding Danio_rerio 0 918
ENSDART00000114766 grik5-201 protein_coding Danio_rerio 0 913
ENSMUST00000034515 Grik4-201 protein_coding Mus_musculus 0 822
ENSMUST00000114865 Grik4-001 protein_coding Mus_musculus 0 822
ENSMUST00000030676 Grik3-001 protein_coding Mus_musculus 0 211

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