C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034774 Itga11-001 ENSMUSG00000032243 10090 + 9:62677826-62783982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034774 3.238±0.14 0.731±0.12 7.065±0.21 0.886±0.63 3.459±1.06 2.234±0.39 0.836±0.23 0.149±0.03 0.051±0.03 0.073±0.00 0.592±0.07 1.981±0.91 0.303±0.22 0.702±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FN CIL_0008FN_0002 VISTA 9:62114649-62715677
CIL_00080E CIL_00080E_0002 VISTA 9:62138578-62752434
CIL_0004FA CIL_0004FA_0002 CGP 9:62677826-62811648

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005518 IEA collagen binding
GO:0005925 IEA focal adhesion
GO:0006929 IEA substrate-dependent cell migration
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0016020 IEA membrane
GO:0033627 IEA cell adhesion mediated by integrin
GO:0034681 IEA integrin alpha11-beta1 complex
GO:0038064 IEA collagen receptor activity
GO:0038065 IEA collagen-activated signaling pathway
GO:0098639 IEA collagen binding involved in cell-matrix adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315757 ITGA11-201 protein_coding Homo_sapiens 0 4109
ENST00000423218 ITGA11-001 protein_coding Homo_sapiens 0 4108
ENST00000562826 ITGA11-009 processed_transcript Homo_sapiens 0 802
ENST00000565868 ITGA11-008 retained_intron Homo_sapiens 0 420
ENST00000566429 ITGA11-006 processed_transcript Homo_sapiens 0 424
ENST00000568677 ITGA11-007 retained_intron Homo_sapiens 0 494
ENST00000569346 ITGA11-005 retained_intron Homo_sapiens 0 577

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