C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315757 ITGA11-201 ENSG00000137809 9606 - 15:68301712-68432153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315757 1.871±0.00 2.116±0.00 0.232±0.00 0.294±0.23 3.363±1.48 1.168±0.31 2.198±2.08 3.965±0.00 1.455±1.30 0.594±0.30 0.500±0.03 8.163±5.11 2.136±0.34 2.716±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046P CIL_00046P_0002 CGP 15:68296533-68727806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005518 IMP collagen binding
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006929 IMP substrate-dependent cell migration
GO:0007155 TAS cell adhesion
GO:0007160 IMP cell-matrix adhesion
GO:0007229 IMP integrin-mediated signaling pathway
GO:0007517 TAS muscle organ development
GO:0008305 TAS integrin complex
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0033627 IMP cell adhesion mediated by integrin
GO:0034681 IDA integrin alpha11-beta1 complex
GO:0038064 IMP collagen receptor activity
GO:0038065 IMP collagen-activated signaling pathway
GO:0046872 IEA metal ion binding
GO:0098639 IMP collagen binding involved in cell-matrix adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034774 Itga11-001 protein_coding Mus_musculus 0 4109
ENSMUST00000159012 Itga11-002 retained_intron Mus_musculus 0 3797
ENSMUST00000061673 Itga1-201 protein_coding Mus_musculus 0.000000003 69

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