C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479660 CLDN18-003 ENSG00000066405 9606 + 3:138010216-138032502 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryENST00000479660
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary
ENST00000479660 0.092±0.00 0.100±0.00 0.031±0.00 0.054±0.00 0.096±0.00 0.117±0.00 0.157±0.00 0.003±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0001 VISTA 3:137620069-138221266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112882 Cldn18-003 protein_coding Mus_musculus 0 422
ENSMUST00000035048 Cldn18-001 protein_coding Mus_musculus 0 422
ENSMUST00000136429 Cldn18-002 protein_coding Mus_musculus 0 372
ENSMUST00000131922 Cldn18-004 protein_coding Mus_musculus 0 305

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