C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343735 CLDN18-001 ENSG00000066405 9606 + 3:137998735-138033655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungOvaryPlacentaENST00000343735
Transcript ID Adipose Brain Breast Heart Lung Ovary Placenta
ENST00000343735 0.035±0.00 0.040±0.03 0.025±0.00 0.015±0.00 7.852±0.00 3.614±2.39 0.038±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0001 VISTA 3:137620069-138221266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0034329 TAS cell junction assembly
GO:0042802 ISS identical protein binding
GO:0045216 TAS cell-cell junction organization
GO:0070830 TAS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112882 Cldn18-003 protein_coding Mus_musculus 0 974
ENSMUST00000131922 Cldn18-004 protein_coding Mus_musculus 0 856
ENSMUST00000035048 Cldn18-001 protein_coding Mus_musculus 0 763
ENSMUST00000136429 Cldn18-002 protein_coding Mus_musculus 0 713

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