C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035342 Adamts20-001 ENSMUSG00000022449 10090 - 15:94270163-94404258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000035342
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000035342 0.131±0.00 0.074±0.02 0.139±0.04 0.034±0.00 0.035±0.02 0.018±0.01 0.052±0.00 0.365±0.18 0.112±0.10 0.017±0.01 0.286±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R4 CIL_0006R4_0002 CGP 15:93499114-94465418
CIL_0006R3 CIL_0006R3_0002 CGP 15:94270163-94543547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IDA endopeptidase activity
GO:0004222 IDA metalloendopeptidase activity
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006508 IDA proteolysis
GO:0008270 IEA zinc ion binding
GO:0009967 IMP positive regulation of signal transduction
GO:0030198 IDA extracellular matrix organization
GO:0043066 IMP negative regulation of apoptotic process
GO:0045636 IGI positive regulation of melanocyte differentiation
GO:0048070 IMP regulation of developmental pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389420 ADAMTS20-001 protein_coding Homo_sapiens 0 3317
ENST00000395541 ADAMTS20-201 protein_coding Homo_sapiens 0 2287
ENST00000553158 ADAMTS20-002 protein_coding Homo_sapiens 0 2386
ENST00000615814 ADAMTS20-202 protein_coding Homo_sapiens 0 3301

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