C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006R4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139174-ENSG00000173157 CGP 9606 12:42456754-43551921
GeneTranscriptPositionBiotype
ENSG00000139174 (PRICKLE1)
prickle homolog 1 (Drosophila) 		ENST00000345127 (PRICKLE1-001) 42456754-42589676 protein_coding
ENST00000445766 (PRICKLE1-005) 42458355-42590355 protein_coding
ENST00000455697 (PRICKLE1-201) 42458338-42483995 protein_coding
ENST00000547113 (PRICKLE1-002) 42469505-42589676 protein_coding
ENST00000548696 (PRICKLE1-003) 42458951-42483942 protein_coding
ENST00000551050 (PRICKLE1-007) 42469477-42483072 protein_coding
ENST00000552108 (PRICKLE1-006) 42468736-42484332 protein_coding
ENST00000552200 (PRICKLE1-008) 42483813-42589744 processed_transcript
ENST00000552240 (PRICKLE1-004) 42459268-42483614 protein_coding
ENSG00000173157 (ADAMTS20)
ADAM metallopeptidase with thrombospondin type 1 motif, 20 		ENST00000389420 (ADAMTS20-001) 43353866-43551921 protein_coding
ENST00000395541 (ADAMTS20-201) 43423576-43551921 protein_coding
ENST00000549670 (ADAMTS20-003) 43422819-43439712 protein_coding
ENST00000553158 (ADAMTS20-002) 43423576-43551921 protein_coding
ENST00000615814 (ADAMTS20-202) 43354209-43551921 protein_coding
ENSG00000240759 (RP11-25I15.1)
 ENST00000486977 (RP11-25I15.1-001) 42678873-42679124 processed_pseudogene
ENSG00000257114 (RP11-25I15.3)
 ENST00000550177 (RP11-25I15.3-001) 42692216-42717119 lincRNA
ENSG00000257164 (RP11-25I15.2)
 ENST00000546982 (RP11-25I15.2-001) 42646583-42686701 lincRNA
ENST00000548764 (RP11-25I15.2-002) 42646583-42682816 lincRNA
ENSG00000257225 (RP11-328C8.4)
 ENST00000547824 (RP11-328C8.4-001) 42459366-42466128 antisense
ENSG00000257373 (RP11-547C5.2)
 ENST00000551279 (RP11-547C5.2-001) 42979254-42996486 lincRNA
ENSG00000257405 (RP11-609L23.2)
 ENST00000550326 (RP11-609L23.2-001) 42636815-42637111 processed_pseudogene
ENSG00000257510 (RP11-609L23.1)
 ENST00000550337 (RP11-609L23.1-001) 42615503-42646498 lincRNA
ENSG00000257849 (RP11-547C5.1)
 ENST00000553006 (RP11-547C5.1-001) 42966122-42967353 lincRNA
ENSG00000257927 (MRPS36P5)
mitochondrial ribosomal protein S36 pseudogene 5 		ENST00000551909 (MRPS36P5-001) 43054089-43054386 processed_pseudogene
ENSG00000258068 (RP11-328C8.5)
 ENST00000547898 (RP11-328C8.5-001) 42485353-42490019 sense_intronic
ENSG00000258331 (RP11-118A3.1)
 ENST00000553211 (RP11-118A3.1-001) 43155315-43163110 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006R4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036158-ENSMUSG00000022449 CGP 10090 15:93499114-94465418
GeneTranscriptPositionBiotype
ENSMUSG00000022449 (Adamts20)
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 		ENSMUST00000035342 (Adamts20-001) 94270163-94404258 protein_coding
ENSMUST00000128797 (Adamts20-004) 94394734-94465418 processed_transcript
ENSMUST00000129195 (Adamts20-003) 94351432-94404350 retained_intron
ENSMUST00000155907 (Adamts20-002) 94320334-94404258 protein_coding
ENSMUSG00000036158 (Prickle1)
prickle homolog 1 (Drosophila) 		ENSMUST00000048982 (Prickle1-001) 93499114-93595891 protein_coding
ENSMUST00000109255 (Prickle1-002) 93499114-93519523 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R4_0001ENSG00000139174ENST00000345127ENST00000445766ENST00000455697ENST00000547113ENST00000548696ENST00000551050ENST00000552108ENST00000552200ENST00000552240ENSG00000173157ENST00000389420ENST00000395541ENST00000549670ENST00000553158ENST00000615814ENSG00000240759ENST00000486977ENSG00000257114ENST00000550177ENSG00000257164ENST00000546982ENST00000548764ENSG00000257225ENST00000547824ENSG00000257373ENST00000551279ENSG00000257405ENST00000550326ENSG00000257510ENST00000550337ENSG00000257849ENST00000553006ENSG00000257927ENST00000551909ENSG00000258068ENST00000547898ENSG00000258331ENST00000553211CIL_0006R4_0002ENSMUSG00000022449ENSMUST00000035342ENSMUST00000128797ENSMUST00000129195ENSMUST00000155907ENSMUSG00000036158ENSMUST00000048982ENSMUST00000109255
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R4_0001ENSG00000139174ENST00000345127ENST00000547113ENSG00000173157ENST00000389420ENST00000549670ENST00000553158ENST00000615814ENSG00000240759ENST00000486977ENSG00000257114ENST00000550177ENSG00000257164ENST00000546982ENST00000548764ENSG00000257225ENST00000547824ENSG00000257373ENST00000551279ENSG00000257405ENST00000550326ENSG00000257510ENST00000550337ENSG00000257849ENST00000553006ENSG00000257927ENST00000551909ENSG00000258068ENST00000547898ENSG00000258331ENST00000553211CIL_0006R4_0002ENSMUSG00000022449ENSMUST00000035342ENSMUST00000128797ENSMUST00000129195ENSMUST00000155907ENSMUSG00000036158ENSMUST00000048982ENSMUST00000109255
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139174 ENST00000345127 1.218±0.00 N/A N/A 2.131±0.15 N/A N/A 1.160±0.00 N/A N/A 1.400±0.25 N/A 2.556±0.86 N/A N/A
ENST00000445766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547113 N/A N/A N/A N/A N/A N/A 17.001±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173157 ENST00000389420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A
ENST00000395541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549670 N/A N/A N/A 0.004±0.00 N/A 0.045±0.00 N/A N/A N/A N/A N/A 0.010±0.00 0.013±0.00 0.056±0.00
ENST00000553158 N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A
ENST00000615814 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00
ENSG00000240759 ENST00000486977 0.124±0.00 0.066±0.00 N/A 0.068±0.00 N/A N/A 0.232±0.00 N/A 0.057±0.00 0.480±0.00 0.168±0.00 0.390±0.00 0.303±0.00 0.269±0.00
ENSG00000257114 ENST00000550177 0.026±0.00 0.053±0.00 N/A 0.028±0.00 0.066±0.00 0.061±0.00 0.024±0.00 0.066±0.00 0.080±0.00 0.303±0.00 N/A 0.063±0.00 0.069±0.02 0.512±0.00
ENSG00000257164 ENST00000546982 0.042±0.00 0.342±0.00 N/A 0.022±0.00 0.290±0.00 0.254±0.00 0.136±0.00 0.021±0.00 0.055±0.00 0.246±0.00 N/A 0.057±0.00 N/A 0.134±0.00
ENST00000548764 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A 0.018±0.00 N/A N/A 0.028±0.00 N/A 0.165±0.13
ENSG00000257225 ENST00000547824 2.238±0.00 4.506±0.00 1.232±0.00 5.252±0.01 2.749±0.00 2.243±0.00 2.590±0.78 N/A 2.943±0.00 2.303±0.00 0.891±0.00 N/A 4.394±3.04 7.994±0.71
ENSG00000257373 ENST00000551279 0.419±0.00 0.409±0.00 N/A 0.371±0.00 0.381±0.00 0.192±0.00 0.134±0.00 0.029±0.00 0.050±0.00 0.290±0.00 N/A 0.039±0.00 N/A 0.281±0.22
ENSG00000257405 ENST00000550326 N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257510 ENST00000550337 N/A 0.009±0.00 N/A 0.018±0.00 N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.395±0.19
ENSG00000257849 ENST00000553006 N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A 0.904±0.00 N/A N/A N/A 0.106±0.00
ENSG00000257927 ENST00000551909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.304±0.00
ENSG00000258068 ENST00000547898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.813±0.00 N/A 0.863±0.19
ENSG00000258331 ENST00000553211 N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022449 ENSMUST00000035342 0.131±0.00 0.074±0.02 N/A N/A 0.139±0.04 0.034±0.00 0.035±0.02 0.018±0.01 N/A 0.052±0.00 0.365±0.18 0.112±0.10 0.017±0.01 0.286±0.09
ENSMUST00000128797 N/A 0.334±0.09 N/A N/A N/A N/A N/A N/A N/A 0.447±0.00 N/A 0.297±0.00 N/A N/A
ENSMUST00000129195 0.253±0.00 0.244±0.14 0.223±0.00 N/A 0.335±0.06 0.154±0.08 N/A 0.029±0.01 0.038±0.02 0.174±0.00 N/A 0.138±0.10 0.055±0.04 0.480±0.00
ENSMUST00000155907 0.113±0.09 0.114±0.02 0.119±0.00 0.945±0.46 0.294±0.10 0.151±0.09 0.024±0.01 0.054±0.02 0.041±0.03 N/A N/A 0.117±0.07 0.022±0.02 0.118±0.03
ENSMUSG00000036158 ENSMUST00000048982 5.975±3.19 4.192±0.68 6.342±0.07 6.075±5.26 1.997±0.71 2.711±1.14 2.041±0.98 2.035±0.84 0.880±0.42 6.362±1.39 0.750±0.19 5.885±2.02 3.254±1.42 0.901±0.41
ENSMUST00000109255 1.628±0.48 1.408±0.46 0.951±0.00 N/A 1.101±0.38 0.528±0.07 1.957±1.13 0.944±0.26 0.294±0.11 21.334±4.14 0.651±0.25 1.427±0.42 0.983±0.50 1.446±0.04

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