C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADAM metallopeptidase with thrombospondin type 1 motif, 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553158 ADAMTS20-002 ENSG00000173157 9606 - 12:43423576-43551921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaENST00000553158
Transcript ID Brain Placenta
ENST00000553158 0.021±0.00 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R4 CIL_0006R4_0001 CGP 12:42456754-43551921
CIL_0006R3 CIL_0006R3_0001 CGP 12:43353866-43758817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155907 Adamts20-002 protein_coding Mus_musculus 0 2386
ENSMUST00000035342 Adamts20-001 protein_coding Mus_musculus 0 2386
ENSMUST00000129195 Adamts20-003 retained_intron Mus_musculus 0 706
ENSMUST00000128797 Adamts20-004 processed_transcript Mus_musculus 0 287

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