C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MyoD family inhibitor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035375 Mdfi-003 ENSMUSG00000032717 10090 - 17:47815336-47833291 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035375 2.881±1.38 1.816±0.56 3.453±0.22 3.528±0.41 6.551±2.43 2.199±0.37 1.977±0.41 1.161±0.32 1.524±1.23 6.473±1.23 0.248±0.07 27.695±10.61 21.746±12.72 0.345±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_00093V CIL_00093V_0002 VISTA 17:47614773-48215356
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007257 IDA activation of JUN kinase activity
GO:0008134 IPI transcription factor binding
GO:0009950 IMP dorsal/ventral axis specification
GO:0030111 IDA regulation of Wnt signaling pathway
GO:0030178 IGI negative regulation of Wnt signaling pathway
GO:0043392 IDA negative regulation of DNA binding
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0060707 IMP trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230321 MDFI-001 protein_coding Homo_sapiens 0 708
ENST00000373050 MDFI-002 protein_coding Homo_sapiens 0 473
ENST00000373051 MDFI-008 protein_coding Homo_sapiens 0 708
ENST00000419164 MDFI-003 protein_coding Homo_sapiens 0 645
ENST00000432027 MDFI-005 protein_coding Homo_sapiens 0 556
ENST00000435476 MDFI-007 protein_coding Homo_sapiens 0 291

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