C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MyoD family inhibitor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230321 MDFI-001 ENSG00000112559 9606 + 6:41638447-41654246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLungOvaryPlacentaTestisENST00000230321
Transcript ID Adipose Heart Kidney Lung Ovary Placenta Testis
ENST00000230321 0.341±0.00 0.169±0.00 0.455±0.00 1.941±1.23 15.916±7.90 3.923±0.15 2.376±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0001 VISTA 6:41112821-41713777
CIL_0007QG CIL_0007QG_0001 VISTA 6:41166717-41767957
CIL_0008IB CIL_0008IB_0001 VISTA 6:41169077-41770286
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_00028Z CIL_00028Z_0002 CGP 6:41546426-41654246
CIL_00028Y CIL_00028Y_0002 CGP 6:41636882-41736259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0007257 IEA activation of JUN kinase activity
GO:0008134 IEA transcription factor binding
GO:0009790 TAS embryo development
GO:0009950 ISS dorsal/ventral axis specification
GO:0030111 IEA regulation of Wnt signaling pathway
GO:0030178 ISS negative regulation of Wnt signaling pathway
GO:0042994 TAS cytoplasmic sequestering of transcription factor
GO:0043392 ISS negative regulation of DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0060707 IEA trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035375 Mdfi-003 protein_coding Mus_musculus 0 708
ENSMUST00000066368 Mdfi-001 protein_coding Mus_musculus 0 708
ENSMUST00000125745 Mdfi-007 processed_transcript Mus_musculus 0 604
ENSMUST00000113280 Mdfi-008 protein_coding Mus_musculus 0 473
ENSMUST00000131971 Mdfi-009 protein_coding Mus_musculus 0 291
ENSDART00000136166 MDFIC (2 of 2)-001 protein_coding Danio_rerio 8e-36 156
ENSDART00000110535 MDFIC (1 of 2)-201 protein_coding Danio_rerio 8e-36 156

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