C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear RNA activating complex, polypeptide 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035427 Snapc4-201 ENSMUSG00000036281 10090 - 2:26362774-26380653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035427
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035427 2.589±0.40 3.301±1.21 3.118±0.00 3.455±0.00 1.833±0.50 0.899±0.20 2.843±1.09 1.969±1.18 3.606±1.69 0.641±0.00 8.792±3.76 3.685±1.10 2.532±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E9 CIL_0002E9_0003 CGP 2:26352176-26380653
CIL_0002E3 CIL_0002E3_0003 CGP 2:26362765-26389316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003682 IEA chromatin binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019185 ISS snRNA-activating protein complex
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0042796 ISS snRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298532 SNAPC4-001 protein_coding Homo_sapiens 0 1530

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