C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035515 Abcb5-001 ENSMUSG00000072791 10090 - 12:118867824-118966421 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainOvaryPlacentaTestisENSMUST00000035515
Transcript ID Adipose Brain Ovary Placenta Testis
ENSMUST00000035515 0.012±0.00 0.007±0.00 0.135±0.08 0.009±0.01 0.380±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T9 CIL_0007T9_0002 VISTA 12:118347247-118948361
CIL_0008JT CIL_0008JT_0002 VISTA 12:118350488-118951732
CIL_0008EN CIL_0008EN_0002 VISTA 12:118402747-119004293
CIL_0008NJ CIL_0008NJ_0002 VISTA 12:118419668-119021135
CIL_0007QC CIL_0007QC_0002 VISTA 12:118425449-119026903
CIL_0007Z1 CIL_0007Z1_0002 VISTA 12:118534480-119136076
CIL_0007YM CIL_0007YM_0002 VISTA 12:118540044-119141444
CIL_0007UH CIL_0007UH_0002 VISTA 12:118543462-119144556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002481 IBA antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 IBA antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 IBA antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 IBA positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 IEA ATP binding
GO:0005887 IDA integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0015562 IEA efflux transmembrane transporter activity
GO:0016021 IBA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0042391 IEA regulation of membrane potential
GO:0042626 IBA ATPase activity, coupled to transmembrane movement of substances
GO:0048058 IMP compound eye corneal lens development
GO:0055085 IBA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258738 ABCB5-001 protein_coding Homo_sapiens 0 2481
ENST00000404938 ABCB5-004 protein_coding Homo_sapiens 0 3345
ENST00000406935 ABCB5-002 protein_coding Homo_sapiens 0 704
ENST00000443026 ABCB5-003 protein_coding Homo_sapiens 0 706
ENST00000477094 ABCB5-006 processed_transcript Homo_sapiens 0 505

Loading