C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404938 ABCB5-004 ENSG00000004846 9606 + 7:20615207-20757009 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverOvaryPlacentaTestisENST00000404938
Transcript ID Adrenal Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000404938 0.031±0.00 0.017±0.00 0.081±0.00 0.011±0.00 0.008±0.00 0.083±0.00 0.024±0.02 0.009±0.00 0.085±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UH CIL_0007UH_0001 VISTA 7:20489771-21090788
CIL_0007YM CIL_0007YM_0001 VISTA 7:20493009-21094283
CIL_0007Z1 CIL_0007Z1_0001 VISTA 7:20499224-21100776

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002481 IBA antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 IBA antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 IBA antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 IBA positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 IEA ATP binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0015562 IDA efflux transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0030154 IEA cell differentiation
GO:0042391 IDA regulation of membrane potential
GO:0042626 IBA:IEA ATPase activity, coupled to transmembrane movement of substances
GO:0048058 ISS compound eye corneal lens development
GO:0055085 IDA:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035515 Abcb5-001 protein_coding Mus_musculus 0 3345
ENSMUST00000100982 Abcb5-002 processed_transcript Mus_musculus 0 658

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