C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035540 Phf2-201 ENSMUSG00000038025 10090 - 13:48801750-48870885 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035540 7.667±0.63 9.358±1.48 12.167±3.85 8.862±0.33 6.195±3.05 6.987±1.62 4.381±0.91 6.246±0.57 3.408±0.93 11.928±1.00 11.498±0.56 9.106±3.39 8.677±4.71 1.447±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XX CIL_0008XX_0002 VISTA 13:48265958-48867063
CIL_0008WO CIL_0008WO_0002 VISTA 13:48416450-49018010
CIL_0008QG CIL_0008QG_0002 VISTA 13:48479624-49081302
CIL_0000W6 CIL_0000W6_0002 CGP 13:48662998-48870885
CIL_0000W5 CIL_0000W5_0002 CGP 13:48801750-48968017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0005506 ISS iron ion binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006482 ISS protein demethylation
GO:0008270 ISS zinc ion binding
GO:0032454 ISS histone demethylase activity (H3-K9 specific)
GO:0033169 IDA histone H3-K9 demethylation
GO:0035064 ISS methylated histone binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process
GO:0061188 ISS negative regulation of chromatin silencing at rDNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359246 PHF2-001 protein_coding Homo_sapiens 0 4078
ENST00000375376 PHF2-201 protein_coding Homo_sapiens 0 898
ENST00000397560 KDM7A-001 protein_coding Homo_sapiens 2e-28 134
ENST00000444553 PHF2P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 680
ENST00000610682 PHF2-202 protein_coding Homo_sapiens 0 917

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