C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008XX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm939 VISTA 9606 9:93838844-94440653
GeneTranscriptPositionBiotype
ENSG00000130950 (NUTM2F)
NUT family member 2F 		ENST00000253262 (NUTM2F-001) 94318196-94328644 protein_coding
ENST00000341207 (NUTM2F-201) 94318196-94328644 protein_coding
ENSG00000131668 (BARX1)
BARX homeobox 1 		ENST00000253968 (BARX1-001) 93951622-93955372 protein_coding
ENST00000401724 (BARX1-002) 93951627-93953431 protein_coding
ENSG00000148110 (HIATL1)
hippocampus abundant transcript-like 1 		ENST00000375344 (HIATL1-001) 94374551-94461042 protein_coding
ENST00000428393 (HIATL1-201) 94446854-94460919 protein_coding
ENSG00000158079 (PTPDC1)
protein tyrosine phosphatase domain containing 1 		ENST00000288976 (PTPDC1-002) 94084464-94109854 protein_coding
ENST00000375360 (PTPDC1-001) 94030794-94109856 protein_coding
ENST00000467049 (PTPDC1-003) 94100087-94107912 processed_transcript
ENST00000620992 (PTPDC1-201) 94084429-94109852 protein_coding
ENSG00000175787 (ZNF169)
zinc finger protein 169 		ENST00000340911 (ZNF169-001) 94259328-94301454 protein_coding
ENST00000395395 (ZNF169-003) 94259311-94301454 protein_coding
ENST00000480716 (ZNF169-004) 94278758-94295846 protein_coding
ENST00000481550 (ZNF169-002) 94278758-94294454 protein_coding
ENST00000492115 (ZNF169-005) 94259321-94292623 retained_intron
ENSG00000199133 (MIRLET7D)
microRNA let-7d 		ENST00000362263 (MIRLET7D-201) 94178834-94178920 miRNA
ENSG00000199165 (MIRLET7A1)
microRNA let-7a-1 		ENST00000362295 (MIRLET7A1-201) 94175952-94176043 miRNA
ENSG00000227666 (CYCSP24)
cytochrome c, somatic pseudogene 24 		ENST00000445119 (CYCSP24-001) 94038030-94038345 processed_pseudogene
ENSG00000230262 (MIRLET7DHG)
MIRLET7D host gene (non-protein coding) 		ENST00000416309 (MIRLET7DHG-001) 94176602-94204543 lincRNA
ENST00000602602 (MIRLET7DHG-002) 94176602-94204568 lincRNA
ENSG00000231990 (RP11-53B5.1)
 ENST00000443771 (RP11-53B5.1-001) 93857083-93858333 lincRNA
ENSG00000232063 (RP11-307E17.8)
 ENST00000454869 (RP11-307E17.8-001) 94332476-94360948 lincRNA
ENSG00000235601 (BARX1-AS1)
BARX1 antisense RNA 1 (head to head) 		ENST00000453045 (BARX1-AS1-001) 93955834-93957922 lincRNA
ENST00000454594 (BARX1-AS1-002) 93955597-93959140 lincRNA
ENSG00000237679 (VDAC1P11)
voltage-dependent anion channel 1 pseudogene 11 		ENST00000458323 (VDAC1P11-001) 94287699-94288550 processed_pseudogene
ENSG00000269929 (RP11-2B6.2)
 ENST00000602652 (RP11-2B6.2-001) 94176458-94177892 lincRNA
ENSG00000269946 (RP11-2B6.3)
 ENST00000602703 (RP11-2B6.3-001) 94166289-94200627 lincRNA
ENSG00000278486 (RP11-533K9.4)
 ENST00000621419 (RP11-533K9.4-001) 94432631-94433273 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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CIL_0008XX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm939 VISTA 10090 13:48265958-48867063
GeneTranscriptPositionBiotype
ENSMUSG00000021381 (Barx1)
BarH-like homeobox 1 		ENSMUST00000021813 (Barx1-001) 48662998-48666507 protein_coding
ENSMUSG00000038025 (Phf2)
PHD finger protein 2 		ENSMUST00000035540 (Phf2-201) 48801750-48870885 protein_coding
ENSMUSG00000038042 (Ptpdc1)
protein tyrosine phosphatase domain containing 1 		ENSMUST00000035824 (Ptpdc1-201) 48577873-48625573 protein_coding
ENSMUSG00000050954 (Zfp169)
zinc finger protein 169 		ENSMUST00000110110 (Zfp169-201) 48489454-48506939 protein_coding
ENSMUST00000167682 (Zfp169-202) 48489202-48506939 protein_coding
ENSMUST00000176176 (Zfp169-001) 48487647-48513436 protein_coding
ENSMUST00000176949 (Zfp169-004) 48491330-48513426 protein_coding
ENSMUST00000176996 (Zfp169-005) 48491252-48513410 protein_coding
ENSMUST00000177474 (Zfp169-003) 48494523-48513451 retained_intron
ENSMUST00000177530 (Zfp169-002) 48487659-48513394 protein_coding
ENSMUSG00000053181 (A830005F24Rik)
RIKEN cDNA A830005F24 gene 		ENSMUST00000065465 (A830005F24Rik-001) 48513570-48514859 protein_coding
ENSMUSG00000093232 (Gm24111)
predicted gene, 24111 		ENSMUST00000175491 (Gm24111-201) 48537825-48537921 miRNA
ENSMUSG00000097326 (A330048O09Rik)
RIKEN cDNA A330048O09 gene 		ENSMUST00000180777 (A330048O09Rik-201) 48272416-48273884 lincRNA
ENSMUSG00000097375 (6720427I07Rik)
RIKEN cDNA 6720427I07 gene 		ENSMUST00000181490 (6720427I07Rik-001) 48535523-48537822 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008XX_0001ENSG00000130950ENST00000253262ENST00000341207ENSG00000131668ENST00000253968ENST00000401724ENSG00000148110ENST00000375344ENST00000428393ENSG00000158079ENST00000288976ENST00000375360ENST00000467049ENST00000620992ENSG00000175787ENST00000340911ENST00000395395ENST00000480716ENST00000481550ENST00000492115ENSG00000199133ENST00000362263ENSG00000199165ENST00000362295ENSG00000227666ENST00000445119ENSG00000230262ENST00000416309ENST00000602602ENSG00000231990ENST00000443771ENSG00000232063ENST00000454869ENSG00000235601ENST00000453045ENST00000454594ENSG00000237679ENST00000458323ENSG00000269929ENST00000602652ENSG00000269946ENST00000602703ENSG00000278486ENST00000621419CIL_0008XX_0002ENSMUSG00000021381ENSMUST00000021813ENSMUSG00000038025ENSMUST00000035540ENSMUSG00000038042ENSMUST00000035824ENSMUSG00000050954ENSMUST00000110110ENSMUST00000167682ENSMUST00000176176ENSMUST00000176949ENSMUST00000176996ENSMUST00000177474ENSMUST00000177530ENSMUSG00000053181ENSMUST00000065465ENSMUSG00000093232ENSMUST00000175491ENSMUSG00000097326ENSMUST00000180777ENSMUSG00000097375ENSMUST00000181490
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130950 ENST00000253262 N/A N/A N/A N/A 0.002±0.00 N/A N/A N/A 0.001±0.00 N/A N/A 0.025±0.00 0.009±0.00 0.261±0.00
ENST00000341207 N/A 0.022±0.00 N/A N/A 0.011±0.00 N/A N/A N/A 0.010±0.00 N/A N/A 0.025±0.00 0.033±0.00 0.272±0.18
ENSG00000131668 ENST00000253968 N/A 0.127±0.00 N/A N/A 0.037±0.00 1.560±0.00 N/A 0.113±0.00 0.032±0.00 N/A N/A 1.719±1.53 0.048±0.00 3.783±1.01
ENST00000401724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 0.081±0.00 1.072±0.00
ENSG00000148110 ENST00000375344 3.885±0.00 5.777±0.00 1.698±0.00 3.137±0.93 6.272±1.31 4.495±0.35 2.806±1.29 4.400±2.40 1.715±0.91 5.267±2.27 1.587±1.01 5.573±0.63 12.278±1.61 5.054±0.30
ENST00000428393 2.560±0.00 6.809±0.00 N/A 2.923±1.12 4.357±0.00 2.742±0.00 2.027±0.00 5.297±0.00 1.458±0.00 5.241±0.00 0.466±0.00 3.451±0.84 3.407±1.37 6.038±2.00
ENSG00000158079 ENST00000288976 N/A 0.510±0.00 N/A 4.338±0.00 0.401±0.00 N/A N/A N/A 0.240±0.00 N/A 0.281±0.00 0.395±0.00 N/A 2.112±0.00
ENST00000375360 1.157±0.00 N/A N/A 0.678±0.00 0.484±0.00 0.888±0.00 1.269±0.31 1.339±0.00 0.197±0.00 1.294±0.21 1.163±0.00 1.505±0.47 0.438±0.13 4.006±0.03
ENST00000467049 N/A N/A N/A N/A 0.854±0.00 1.560±0.00 N/A N/A 1.220±0.00 N/A 0.150±0.00 1.905±0.00 0.141±0.00 N/A
ENST00000620992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175787 ENST00000340911 0.227±0.00 0.839±0.00 N/A N/A 0.427±0.22 N/A 0.129±0.05 0.237±0.00 0.182±0.12 0.091±0.00 N/A 0.629±0.05 0.237±0.00 0.534±0.38
ENST00000395395 N/A 0.770±0.00 0.558±0.00 0.161±0.00 0.404±0.00 0.626±0.31 0.079±0.02 0.169±0.00 0.165±0.08 0.387±0.13 0.393±0.31 0.279±0.00 0.132±0.04 0.501±0.00
ENST00000480716 0.281±0.00 0.358±0.00 N/A 0.790±0.58 0.107±0.00 0.132±0.00 0.125±0.00 0.022±0.00 0.056±0.00 0.043±0.00 0.106±0.00 0.298±0.00 0.133±0.03 0.279±0.00
ENST00000481550 N/A N/A 0.185±0.00 0.603±0.00 0.671±0.00 N/A N/A N/A 0.375±0.14 0.043±0.00 N/A N/A 0.108±0.03 N/A
ENST00000492115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199133 ENST00000362263 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.878±0.00 N/A N/A N/A N/A
ENSG00000199165 ENST00000362295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.645±0.20
ENSG00000227666 ENST00000445119 0.147±0.00 0.156±0.00 N/A 0.637±0.31 0.546±0.23 2.496±0.00 1.026±0.83 0.210±0.00 N/A 2.575±0.00 1.673±0.00 1.161±1.32 N/A 0.173±0.01
ENSG00000230262 ENST00000416309 0.075±0.00 0.384±0.00 N/A N/A N/A 0.072±0.00 0.334±0.00 0.523±0.00 N/A N/A N/A 0.475±0.00 N/A N/A
ENST00000602602 N/A 0.496±0.00 2.397±0.00 0.759±0.53 2.421±1.89 2.688±0.00 0.931±0.59 1.114±0.08 0.443±0.00 2.991±2.72 0.081±0.04 1.261±1.18 0.234±0.10 0.873±0.02
ENSG00000231990 ENST00000443771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.543±0.07
ENSG00000232063 ENST00000454869 0.284±0.00 1.411±0.00 N/A 0.644±0.00 0.694±0.00 0.569±0.00 0.519±0.00 0.510±0.00 0.770±0.74 1.046±0.26 0.218±0.03 0.835±0.67 0.514±0.13 1.069±0.13
ENSG00000235601 ENST00000453045 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A N/A 0.045±0.03
ENST00000454594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00
ENSG00000237679 ENST00000458323 0.047±0.00 N/A N/A 0.068±0.00 0.083±0.00 N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A
ENSG00000269929 ENST00000602652 0.068±0.00 N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A 0.075±0.00 0.061±0.00 N/A
ENSG00000269946 ENST00000602703 0.463±0.00 1.175±0.00 N/A 0.367±0.00 N/A N/A 0.547±0.28 N/A 0.319±0.00 3.440±0.00 0.294±0.00 0.271±0.00 1.222±0.19 1.825±0.52
ENSG00000278486 ENST00000621419 N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 0.099±0.00 N/A N/A 0.040±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021381 ENSMUST00000021813 N/A N/A 0.008±0.00 0.111±0.06 N/A 0.029±0.01 0.069±0.01 N/A 0.507±0.28 0.075±0.03 N/A 0.073±0.03 1.653±1.05 0.104±0.06
ENSMUSG00000038025 ENSMUST00000035540 7.667±0.63 9.358±1.48 12.167±3.85 8.862±0.33 6.195±3.05 6.987±1.62 4.381±0.91 6.246±0.57 3.408±0.93 11.928±1.00 11.498±0.56 9.106±3.39 8.677±4.71 1.447±0.12
ENSMUSG00000038042 ENSMUST00000035824 1.952±0.82 1.310±0.48 1.752±0.60 2.082±0.32 0.904±0.49 0.777±0.17 0.687±0.22 3.632±0.66 0.168±0.10 1.762±0.37 0.960±0.20 1.429±0.49 1.066±0.59 30.638±17.88
ENSMUSG00000050954 ENSMUST00000110110 N/A N/A N/A 0.985±0.00 N/A N/A N/A N/A N/A 0.950±0.00 0.247±0.11 N/A 0.169±0.02 3.202±0.51
ENSMUST00000167682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176176 N/A 0.735±0.20 N/A N/A 1.382±0.09 1.140±0.17 0.379±0.02 0.579±0.00 0.576±0.04 1.613±0.04 N/A 1.692±0.49 N/A N/A
ENSMUST00000176949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.01 N/A
ENSMUST00000177530 1.133±0.24 0.714±0.15 N/A N/A 1.460±0.18 1.079±0.00 0.156±0.00 N/A 0.239±0.00 1.362±0.06 0.193±0.09 0.919±0.46 0.040±0.00 2.644±0.80
ENSMUSG00000053181 ENSMUST00000065465 0.141±0.00 N/A 0.112±0.03 1.210±0.65 0.137±0.05 N/A 0.108±0.04 N/A 0.180±0.11 N/A 0.083±0.01 0.132±0.04 0.124±0.08 0.469±0.55
ENSMUSG00000093232 ENSMUST00000175491 N/A N/A N/A 27.922±0.00 N/A N/A N/A N/A N/A N/A N/A 83.834±0.00 107.822±0.84 N/A
ENSMUSG00000097326 ENSMUST00000180777 0.174±0.16 N/A 2.299±0.17 0.797±0.30 N/A 0.228±0.00 N/A 0.077±0.00 N/A N/A N/A 0.256±0.14 0.105±0.04 0.059±0.02
ENSMUSG00000097375 ENSMUST00000181490 1.331±0.20 0.545±0.21 6.505±1.96 2.978±2.00 1.352±0.27 0.704±0.28 1.043±0.29 1.008±0.27 2.370±1.40 1.687±0.27 0.895±0.11 1.606±1.13 1.964±0.68 1.264±0.39

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