C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 62
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543586 TRIM62-006 ENSG00000116525 9606 - 1:33146702-33176550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000543586
Transcript ID Bladder
ENST00000543586 0.428±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032897 IDA negative regulation of viral transcription
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 IMP innate immune response
GO:0046596 IDA regulation of viral entry into host cell
GO:0051091 IMP positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:1902186 IMP regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035667 Trim62-001 protein_coding Mus_musculus 0 1354
ENSMUST00000147852 Trim62-002 nonsense_mediated_decay Mus_musculus 0 553

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