C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035800 Nfatc1-201 ENSMUSG00000033016 10090 - 18:80647435-80708173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035800 2.627±0.25 3.641±0.51 0.646±0.36 0.212±0.14 8.095±3.67 3.319±0.93 1.626±0.47 1.461±0.15 1.248±0.49 5.316±1.45 2.349±0.25 1.782±0.65 0.783±0.95 0.154±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y9 CIL_0007Y9_0002 VISTA 18:80030119-80632361
CIL_0008HP CIL_0008HP_0002 VISTA 18:80487642-81088565
CIL_0008IX CIL_0008IX_0002 VISTA 18:80511437-81112175
CIL_0008KF CIL_0008KF_0002 VISTA 18:80518312-81119092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001837 IMP epithelial to mesenchymal transition
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006816 IMP calcium ion transport
GO:0007507 IMP heart development
GO:0010628 IDA positive regulation of gene expression
GO:0030316 IGI osteoclast differentiation
GO:0035556 ISO intracellular signal transduction
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052521 nfatc1-001 protein_coding Danio_rerio 0 403
ENST00000253506 NFATC1-001 protein_coding Homo_sapiens 0 1748
ENST00000318065 NFATC1-003 protein_coding Homo_sapiens 0 1821
ENST00000329101 NFATC1-009 protein_coding Homo_sapiens 0 1821
ENST00000427363 NFATC1-007 protein_coding Homo_sapiens 0 1748
ENST00000542384 NFATC1-006 protein_coding Homo_sapiens 0 1748
ENST00000586434 NFATC1-010 protein_coding Homo_sapiens 0 1816
ENST00000587635 NFATC1-005 protein_coding Homo_sapiens 0 1277
ENST00000591814 NFATC1-004 protein_coding Homo_sapiens 0 1772
ENST00000592223 NFATC1-011 protein_coding Homo_sapiens 0 1845

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