C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035824 Ptpdc1-201 ENSMUSG00000038042 10090 - 13:48577873-48625573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035824 1.952±0.82 1.310±0.48 1.752±0.60 2.082±0.32 0.904±0.49 0.777±0.17 0.687±0.22 3.632±0.66 0.168±0.10 1.762±0.37 0.960±0.20 1.429±0.49 1.066±0.59 30.638±17.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DD CIL_0009DD_0002 VISTA 13:48083545-48684932
CIL_0008XX CIL_0008XX_0002 VISTA 13:48265958-48867063
CIL_0008WO CIL_0008WO_0002 VISTA 13:48416450-49018010
CIL_0008QG CIL_0008QG_0002 VISTA 13:48479624-49081302
CIL_0000WB CIL_0000WB_0002 CGP 13:48577873-48666507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005575 ND cellular_component
GO:0007224 IMP smoothened signaling pathway
GO:0008138 IEA protein tyrosine/serine/threonine phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288976 PTPDC1-002 protein_coding Homo_sapiens 0 1906
ENST00000375360 PTPDC1-001 protein_coding Homo_sapiens 0 1971
ENST00000467049 PTPDC1-003 processed_transcript Homo_sapiens 0 438
ENST00000620992 PTPDC1-201 protein_coding Homo_sapiens 0 1906

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