C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exoribonuclease 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037127 Eri3-001 ENSMUSG00000033423 10090 + 4:117550365-117674297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037127 34.695±2.99 35.119±7.71 37.351±9.34 53.334±29.52 22.535±4.39 19.628±2.22 26.028±1.15 23.469±2.08 15.535±5.09 22.103±1.32 42.660±4.08 33.763±11.66 14.234±5.31 20.939±9.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0007OR CIL_0007OR_0002 UCNEbase 4:117349630-117647360
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004527 IEA exonuclease activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372257 ERI3-001 protein_coding Homo_sapiens 0 2263
ENST00000372259 ERI3-003 protein_coding Homo_sapiens 0 1286
ENST00000452396 ERI3-004 protein_coding Homo_sapiens 0 610
ENST00000456170 ERI3-006 protein_coding Homo_sapiens 0 774
ENST00000457571 ERI3-002 protein_coding Homo_sapiens 0 1424
ENST00000462341 ERI3-009 processed_transcript Homo_sapiens 0 231
ENST00000479101 ERI3-007 processed_transcript Homo_sapiens 0 189
ENST00000489710 ERI3-008 processed_transcript Homo_sapiens 0 291
ENST00000495828 ERI3-005 processed_transcript Homo_sapiens 0 922

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