C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001MB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136045-ENSG00000110851 CGP 9606 12:107685732-107761272
GeneTranscriptPositionBiotype
ENSG00000110851 (PRDM4)
PR domain containing 4
ENST00000228437 (PRDM4-001) 107732866-107761160 protein_coding
ENST00000547188 (PRDM4-004) 107754028-107760928 protein_coding
ENST00000547268 (PRDM4-003) 107754026-107761024 processed_transcript
ENST00000549416 (PRDM4-006) 107741066-107742593 retained_intron
ENST00000550376 (PRDM4-002) 107734191-107761272 nonsense_mediated_decay
ENST00000550659 (PRDM4-005) 107742249-107751775 protein_coding
ENSG00000136045 (PWP1)
PWP1 homolog (S. cerevisiae)
ENST00000412830 (PWP1-001) 107685732-107713167 protein_coding
ENST00000541166 (PWP1-005) 107686042-107712412 protein_coding
ENST00000547120 (PWP1-007) 107692683-107697584 retained_intron
ENST00000547995 (PWP1-006) 107685808-107693075 protein_coding
ENST00000552760 (PWP1-003) 107685802-107697578 nonsense_mediated_decay
ENSG00000240441 (RP11-864J10.2)
ENST00000488371 (RP11-864J10.2-001) 107719599-107720133 processed_pseudogene
CIL_0001MB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001785-ENSMUSG00000035529 CGP 10090 10:85871831-85916945
GeneTranscriptPositionBiotype
ENSMUSG00000001785 (Pwp1)
PWP1 homolog (S. cerevisiae)
ENSMUST00000001836 (Pwp1-001) 85871831-85889096 protein_coding
ENSMUST00000164053 (Pwp1-002) 85871884-85884688 retained_intron
ENSMUST00000164562 (Pwp1-004) 85876254-85884487 retained_intron
ENSMUST00000168509 (Pwp1-003) 85871906-85882099 nonsense_mediated_decay
ENSMUSG00000035529 (Prdm4)
PR domain containing 4
ENSMUST00000037646 (Prdm4-201) 85891970-85916945 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MB_0001ENSG00000110851ENST00000228437ENST00000547188ENST00000547268ENST00000549416ENST00000550376ENST00000550659ENSG00000136045ENST00000412830ENST00000541166ENST00000547120ENST00000547995ENST00000552760ENSG00000240441ENST00000488371CIL_0001MB_0002ENSMUSG00000001785ENSMUST00000001836ENSMUST00000164053ENSMUST00000164562ENSMUST00000168509ENSMUSG00000035529ENSMUST00000037646
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MB_0001ENSG00000110851ENST00000228437ENST00000550376ENSG00000136045ENST00000412830ENST00000541166ENST00000547995ENST00000552760ENSG00000240441ENST00000488371CIL_0001MB_0002ENSMUSG00000001785ENSMUST00000001836ENSMUST00000164053ENSMUST00000164562ENSMUST00000168509ENSMUSG00000035529ENSMUST00000037646
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110851 ENST00000228437 4.681±0.00 6.104±0.00 0.428±0.00 2.769±0.24 3.243±0.78 3.732±0.00 2.296±1.68 8.713±0.00 1.098±0.25 1.689±0.92 2.153±0.33 5.440±3.05 3.695±0.87 7.408±1.02
ENST00000547188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550376 N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00 0.838±0.00 N/A N/A N/A N/A
ENST00000550659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136045 ENST00000412830 2.830±0.00 2.270±0.00 2.946±0.00 4.945±0.83 3.628±0.85 1.820±0.23 0.812±0.40 3.049±0.50 2.239±0.80 1.829±0.52 1.759±0.00 6.699±0.59 6.559±2.77 6.635±2.26
ENST00000541166 13.805±0.00 18.558±0.00 N/A 9.106±0.00 15.709±0.00 7.548±4.81 2.023±1.75 5.275±4.22 3.692±2.33 5.040±0.00 3.059±2.76 10.732±2.10 11.007±0.19 22.141±0.00
ENST00000547120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.640±0.00 N/A 13.849±0.00
ENST00000552760 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.863±0.00 1.097±0.00 25.097±0.00 30.541±0.00 38.663±0.00
ENSG00000240441 ENST00000488371 N/A 0.076±0.00 0.820±0.00 0.334±0.00 0.092±0.00 N/A 0.100±0.01 N/A 0.225±0.00 N/A N/A 0.213±0.09 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001785 ENSMUST00000001836 9.310±3.67 5.114±1.50 7.746±2.10 9.786±5.75 6.378±0.71 5.666±0.77 4.339±0.25 5.266±0.41 8.232±3.44 6.556±0.90 8.126±0.78 10.212±2.50 7.488±4.97 8.378±0.56
ENSMUST00000164053 N/A N/A N/A 8.602±0.00 4.933±0.00 N/A N/A N/A 4.570±0.94 N/A N/A 16.470±0.00 10.746±7.42 7.252±0.00
ENSMUST00000164562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.176±0.00 N/A N/A
ENSMUST00000168509 N/A N/A N/A 8.997±0.00 N/A N/A N/A N/A N/A N/A N/A 22.044±0.00 13.411±6.11 21.782±0.00
ENSMUSG00000035529 ENSMUST00000037646 3.253±2.08 2.468±1.34 6.809±0.62 5.424±3.74 5.171±1.54 5.028±1.70 2.550±1.13 2.357±1.59 1.925±1.53 3.609±1.71 1.405±0.34 4.441±2.05 5.284±4.37 5.578±3.06

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