C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3 GTPase activating protein subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037649 Rab3gap1-001 ENSMUSG00000036104 10090 + 1:127868773-127943868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037649 8.162±1.63 7.673±0.65 8.496±0.34 10.956±5.67 7.561±1.62 8.170±1.91 4.822±0.75 8.421±1.11 4.679±0.76 9.141±0.53 7.328±0.40 7.595±3.53 9.081±1.36 4.153±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VQ CIL_0006VQ_0002 CGP 1:127815253-127943868
CIL_0006VP CIL_0006VP_0002 CGP 1:127868773-128103047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 ISO Rab GTPase activator activity
GO:0005737 ISS cytoplasm
GO:0007420 IEA brain development
GO:0010807 TAS regulation of synaptic vesicle priming
GO:0017112 IEA Rab guanyl-nucleotide exchange factor activity
GO:0017137 ISS Rab GTPase binding
GO:0021854 IEA hypothalamus development
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0033126 ISS positive regulation of GTP catabolic process
GO:0034389 ISO lipid particle organization
GO:0043010 IEA camera-type eye development
GO:0043087 IEA regulation of GTPase activity
GO:0043234 ISS protein complex
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity
GO:0048489 NAS synaptic vesicle transport
GO:0050821 IC protein stabilization
GO:0060079 IMP regulation of excitatory postsynaptic membrane potential
GO:0060325 IEA face morphogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:0071782 ISS endoplasmic reticulum tubular network
GO:0097051 ISS establishment of protein localization to endoplasmic reticulum membrane
GO:1903233 IMP regulation of calcium ion-dependent exocytosis of neurotransmitter
GO:1903373 ISS positive regulation of endoplasmic reticulum tubular network organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264158 RAB3GAP1-001 protein_coding Homo_sapiens 0 3358
ENST00000425393 RAB3GAP1-003 protein_coding Homo_sapiens 0 219
ENST00000442034 RAB3GAP1-002 protein_coding Homo_sapiens 0 3275
ENST00000487003 RAB3GAP1-004 processed_transcript Homo_sapiens 0 3107
ENST00000489858 RAB3GAP1-006 retained_intron Homo_sapiens 0 579
ENST00000539493 RAB3GAP1-201 protein_coding Homo_sapiens 0 3107

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