C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3 GTPase activating protein subunit 1 (catalytic)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442034 RAB3GAP1-002 ENSG00000115839 9606 + 2:135052298-135169989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000442034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000442034 7.551±0.00 5.685±0.00 1.454±0.00 10.874±0.36 4.777±2.73 5.856±0.93 4.597±2.42 4.410±3.55 3.521±1.19 5.740±0.28 4.062±0.70 4.775±0.02 4.021±0.00 6.572±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VQ CIL_0006VQ_0001 CGP 2:134964491-135176394
CIL_0006VP CIL_0006VP_0001 CGP 2:135052265-135531236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IDA Rab GTPase activator activity
GO:0005737 IDA cytoplasm
GO:0007420 IMP brain development
GO:0017112 IMP Rab guanyl-nucleotide exchange factor activity
GO:0017137 IPI Rab GTPase binding
GO:0021854 IMP hypothalamus development
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0033126 IMP positive regulation of GTP catabolic process
GO:0034389 IMP lipid particle organization
GO:0043010 IMP camera-type eye development
GO:0043087 IDA regulation of GTPase activity
GO:0043234 IDA protein complex
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0060079 ISS regulation of excitatory postsynaptic membrane potential
GO:0060325 IMP face morphogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0071782 IDA endoplasmic reticulum tubular network
GO:0097051 IMP establishment of protein localization to endoplasmic reticulum membrane
GO:1903233 ISS regulation of calcium ion-dependent exocytosis of neurotransmitter
GO:1903373 IMP positive regulation of endoplasmic reticulum tubular network organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037649 Rab3gap1-001 protein_coding Mus_musculus 0 3275
ENSMUST00000142662 Rab3gap1-003 retained_intron Mus_musculus 0 819
ENSMUST00000186865 Rab3gap1-006 processed_transcript Mus_musculus 0 220
ENSMUST00000189259 Rab3gap1-005 retained_intron Mus_musculus 0 193

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