C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acid-sensing (proton-gated) ion channel family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037708 Asic4-001 ENSMUSG00000033007 10090 + 1:75450699-75474343 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037708 0.108±0.08 3.772±0.71 0.015±0.00 9.258±1.84 0.053±0.02 0.104±0.03 0.010±0.00 0.026±0.01 0.035±0.02 0.049±0.00 0.014±0.00 0.847±0.33 0.043±0.03 0.316±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_000415 CIL_000415_0003 CGP 1:75435930-75474343
CIL_000414 CIL_000414_0003 CGP 1:75450436-75479307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297512 ASIC3-005 protein_coding Homo_sapiens 8.00001e-41 172
ENST00000347842 ASIC4-001 protein_coding Homo_sapiens 0 1637
ENST00000349064 ASIC3-003 protein_coding Homo_sapiens 8.99998e-41 172
ENST00000357922 ASIC3-001 protein_coding Homo_sapiens 9.99995e-41 172
ENST00000358078 ASIC4-002 protein_coding Homo_sapiens 0 2632
ENST00000377904 ASIC3-002 nonsense_mediated_decay Homo_sapiens 9.99995e-41 172
ENST00000461395 ASIC4-004 retained_intron Homo_sapiens 0 1402
ENST00000468325 ASIC3-004 nonsense_mediated_decay Homo_sapiens 8.00001e-41 172
ENST00000473709 ASIC4-005 processed_transcript Homo_sapiens 0 693
ENST00000474135 ASIC3-006 retained_intron Homo_sapiens 2e-38 163
ENST00000474489 ASIC4-003 retained_intron Homo_sapiens 0 1120

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